RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 UTP20O75691 2785 aaKnown RBP11.28□□□□□ -0.6
RTN3-204ENST00000354497 USP9XQ93008 2570 aaPredicted RBP11.28□□□□□ -0.6
RTN3-204ENST00000354497 FAM170AA1A519 330 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 A1L4Q6 167 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 PRR19A6NJB7 356 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 RHPN2P1A8MT19 583 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 PPP1R3GB7ZBB8 358 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 MAP2K7O14733 419 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 AREL1O15033 823 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 CPNE6O95741 557 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 ERBB2P04626 1255 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 TUBBP07437 444 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 MYBL2P10244 700 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 PNLIPP16233 465 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 NR1D1P20393 614 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 ACVRL1P37023 503 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 UQCRFS1P47985 274 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 MNAT1P51948 309 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 KLRB1Q12918 225 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 SEPT6Q14141 434 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 MEA1Q16626 185 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 TSR1Q2NL82 804 aaKnown RBP11.27□□□□□ -0.6
RTN3-204ENST00000354497 MYLK3Q32MK0 819 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 FHL5Q5TD97 284 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 OTUD1Q5VV17 481 aaPredicted RBP11.27□□□□□ -0.6
RTN3-204ENST00000354497 KCTD16Q68DU8 428 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 SPECC1LQ69YQ0 1117 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 ISM2Q6H9L7 571 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 C16orf46Q6P387 395 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 SARM1Q6SZW1 724 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 OLFML1Q6UWY5 402 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 ZNF783Q6ZMS7 281 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 SDCCAG8Q86SQ7 713 aaPredicted RBP11.27□□□□□ -0.6
RTN3-204ENST00000354497 FAM129CQ86XR2 697 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 C1orf131Q8NDD1 294 aaKnown RBP11.27□□□□□ -0.6
RTN3-204ENST00000354497 OR2AP1Q8NGE2 309 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 LMO3Q8TAP4 145 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 SPATA20Q8TB22 786 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 ART4Q93070 314 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 KIAA1143Q96AT1 154 aaPredicted RBP11.27□□□□□ -0.6
RTN3-204ENST00000354497 RBM15Q96T37 977 aaKnown RBP eCLIP11.27□□□□□ -0.64e-7■■■□□ 16.7
RTN3-204ENST00000354497 NUDT22Q9BRQ3 303 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 OSBPL1AQ9BXW6 950 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 ZYG11BQ9C0D3 744 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 INTS2Q9H0H0 1204 aaKnown RBP11.27□□□□□ -0.6
RTN3-204ENST00000354497 GPN2Q9H9Y4 310 aaPredicted RBP11.27□□□□□ -0.6
RTN3-204ENST00000354497 UBE2TQ9NPD8 197 aaPredicted RBP11.27□□□□□ -0.6
RTN3-204ENST00000354497 RMND1Q9NWS8 449 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 STAP1Q9ULZ2 295 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 SRPK3Q9UPE1 567 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 UNC79Q9P2D8 2635 aa11.27□□□□□ -0.6
RTN3-204ENST00000354497 I6L893 689 aaPredicted RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 VPS4BO75351 444 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 SNUPNO95149 360 aaKnown RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 POP4O95707 220 aaKnown RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 GSRP00390 522 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 FGF3P11487 239 aaPredicted RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 MPSTP25325 297 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 CXCR3P49682 368 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 MAZP56270 477 aaKnown RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 UBE2HP62256 183 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 B4GALNT1Q00973 533 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 SLC6A3Q01959 620 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 CDC20Q12834 499 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 PNOCQ13519 176 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 HLTFQ14527 1009 aaKnown RBP eCLIP11.26□□□□□ -0.61
RTN3-204ENST00000354497 NAA30Q147X3 362 aaPredicted RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 WSCD2Q2TBF2 565 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 HSP90B2PQ58FF3 399 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 KIAA1328Q86T90 577 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 IRF2BP1Q8IU81 584 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 TEX19Q8NA77 164 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 NETO2Q8NC67 525 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 APOBEC4Q8WW27 367 aaKnown RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 OR1E3Q8WZA6 343 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 ARHGEF2Q92974 986 aaKnown RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 ISG20Q96AZ6 181 aaKnown RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 CCDC34Q96HJ3 373 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 TBCBQ99426 244 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 BAG1Q99933 345 aaPredicted RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 B3GNT4Q9C0J1 378 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 CDH19Q9H159 772 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 MRPL40Q9NQ50 206 aaKnown RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 CHCHD3Q9NX63 227 aaKnown RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 SLC39A1Q9NY26 324 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.26□□□□□ -0.61
RTN3-204ENST00000354497 VPS4AQ9UN37 437 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 TP53TG5Q9Y2B4 290 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 B3GALT1Q9Y5Z6 326 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 IGHV5-10-1A0A0J9YXX1 117 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 CACNB4O00305 520 aaPredicted RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 HGSO14964 777 aaPredicted RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 B4GAT1O43505 415 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 CD160O95971 181 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 PECAM1P16284 738 aaPredicted RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 GNLYP22749 145 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 CSTF2P33240 577 aaKnown RBP eCLIP11.26□□□□□ -0.61
RTN3-204ENST00000354497 ARSDP51689 593 aa11.26□□□□□ -0.61
RTN3-204ENST00000354497 GEMIN4P57678 1058 aaKnown RBP11.26□□□□□ -0.61
RTN3-204ENST00000354497 LRRC63Q05C16 580 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms