RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 OR52K2Q8NGK3 314 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 FEM1CQ96JP0 617 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 HCSTQ9UBK5 93 aa21.84■■□□□ 1.09
SHMT1-202ENST00000352886 ABT1Q9ULW3 272 aaKnown RBP21.84■■□□□ 1.09
SHMT1-202ENST00000352886 UBFD1O14562 309 aaKnown RBP21.83■■□□□ 1.09
SHMT1-202ENST00000352886 CD3EAPO15446 510 aaKnown RBP21.83■■□□□ 1.09
SHMT1-202ENST00000352886 RNASEH1O60930 286 aaKnown RBP21.83■■□□□ 1.09
SHMT1-202ENST00000352886 SUPT7LO94864 414 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 VNN2O95498 520 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 FGF1P05230 155 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 TSPAN8P19075 237 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 IMPDH1P20839 514 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 ME2P23368 584 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 SLC26A3P40879 764 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 GATMP50440 423 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 KCNQ1P51787 676 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 MS4A2Q01362 244 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 GRAMD1BQ3KR37 738 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 ZNF549Q6P9A3 640 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 PQLC1Q8N2U9 271 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 PHC3Q8NDX5 983 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 OR13C4Q8NGS5 318 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 GIPC2Q8TF65 315 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 PTERQ96BW5 349 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 TUBGCP5Q96RT8 1024 aa21.83■■□□□ 1.09
SHMT1-202ENST00000352886 CHD5Q8TDI0 1954 aa21.83■■□□□ 1.08
SHMT1-202ENST00000352886 A0A0D9SEW6 157 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 MAP3K13O43283 966 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 FGFR3P22607 806 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 DUSP4Q13115 394 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 GPR17Q13304 367 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 LGI2Q8N0V4 545 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 BHLHE22Q8NFJ8 381 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-202ENST00000352886 HMGCLL1Q8TB92 370 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 PDFQ9HBH1 243 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 TRPC7Q9HCX4 862 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 C6orf203Q9P0P8 240 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-202ENST00000352886 ACTL7AQ9Y615 435 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 CCDC162PA2VCL2 907 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 F5H5T6 163 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 UBDO15205 165 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 TRPA1O75762 1119 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 UQCRBP14927 111 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 FDXRP22570 491 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 ATXN3P54252 364 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-202ENST00000352886 SEMA3AQ14563 771 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 ZNF678Q5SXM1 525 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 ACBD5Q5T8D3 534 aaPredicted RBP21.82■■□□□ 1.08
SHMT1-202ENST00000352886 CLEC6AQ6EIG7 209 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 EXT2Q93063 718 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 SPATA17Q96L03 361 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 MRPL1Q9BYD6 325 aaKnown RBP21.82■■□□□ 1.08
SHMT1-202ENST00000352886 MARCH5Q9NX47 278 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 TRAF6Q9Y4K3 522 aa21.82■■□□□ 1.08
SHMT1-202ENST00000352886 ALDH1A3P47895 512 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 MED21Q13503 144 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 OGFRL1Q5TC84 451 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-202ENST00000352886 MRNIPQ6NTE8 343 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 RYBPQ8N488 228 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-202ENST00000352886 L3HYPDHQ96EM0 354 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 PDP2Q9P2J9 529 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 BCAP29Q9UHQ4 241 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 RPP40O75818 363 aaKnown RBP21.81■■□□□ 1.08
SHMT1-202ENST00000352886 ALDH2P05091 517 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 SERPINF2P08697 491 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 TCN1P20061 433 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-202ENST00000352886 PEX19P40855 299 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 INHBCP55103 352 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 PTK2BQ14289 1009 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 FASTKQ14296 549 aaKnown RBP21.81■■□□□ 1.08
SHMT1-202ENST00000352886 SQLEQ14534 574 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 RTP2Q5QGT7 225 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 NAIF1Q69YI7 327 aaPredicted RBP21.81■■□□□ 1.08
SHMT1-202ENST00000352886 BRSK1Q8TDC3 778 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 TRMOQ9BU70 441 aa21.81■■□□□ 1.08
SHMT1-202ENST00000352886 NT5C1B-RDH14C9J2C7 533 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 PEX1O43933 1283 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 EPOP01588 193 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 CD1DP15813 335 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 TIAL1Q01085 375 aaKnown RBP eCLIP21.8■■□□□ 1.08
SHMT1-202ENST00000352886 LAMB3Q13751 1172 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 PEX13Q92968 403 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 POLR3BQ9NW08 1133 aaPredicted RBP21.8■■□□□ 1.08
SHMT1-202ENST00000352886 CCDC167Q9P0B6 97 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 ASB3Q9Y575 518 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 MOXD2PA6NHM9 499 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 PSMD12O00232 456 aaPredicted RBP21.8■■□□□ 1.08
SHMT1-202ENST00000352886 GPC4O75487 556 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 MT-CO1P00395 513 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 ZDHHC11BP0C7U3 371 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 SLC6A4P31645 630 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 SLC11A1P49279 550 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 MMEL1Q495T6 779 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 FUT10Q6P4F1 479 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 PCDH20Q8N6Y1 951 aaKnown RBP21.8■■□□□ 1.08
SHMT1-202ENST00000352886 FAM156AQ8NDB6 213 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 GPR150Q8NGU9 434 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 OR4L1Q8NH43 312 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 CATSPERZQ9NTU4 200 aa21.8■■□□□ 1.08
SHMT1-202ENST00000352886 MRGBPQ9NV56 204 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms