RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 PAGE2BQ5JRK9 111 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 ZNF57Q68EA5 555 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-203ENST00000343508 USP43Q70EL4 1123 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 SLC2A14Q8TDB8 520 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 TRUB1Q8WWH5 349 aaKnown RBP4.8□□□□□ -1.64
CSMD3-203ENST00000343508 AURKBQ96GD4 344 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-203ENST00000343508 PPP3R2Q96LZ3 170 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 CSPG4P5Q96PW8 444 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 SSR3Q9UNL2 185 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 DGKBQ9Y6T7 804 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 CCDC162PA2VCL2 907 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 TPD52L2O43399 206 aaKnown RBP4.8□□□□□ -1.64
CSMD3-203ENST00000343508 MPZL2O60487 215 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 OR1E1P30953 314 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 KCNJ11Q14654 390 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 QPRTQ15274 297 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 BICRALQ6AI39 1079 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 SLC44A2Q8IWA5 706 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-203ENST00000343508 TMEM86AQ8N2M4 240 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 JOSD2Q8TAC2 188 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 LENG9Q96B70 501 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 CAB39LQ9H9S4 337 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 CNTN6Q9UQ52 1028 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 ZNF487B1APH4 448 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 F5H5T6 163 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 CYP2A7P20853 494 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 SPDYE7PQ495Y7 208 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 NEK5Q6P3R8 708 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 RNF19BQ6ZMZ0 732 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 CCDC149Q6ZUS6 474 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 ELMOD1Q8N336 334 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 FLCNQ8NFG4 579 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 LMO3Q8TAP4 145 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 FAM136AQ96C01 138 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 TSEN34Q9BSV6 310 aaKnown RBP4.8□□□□□ -1.64
CSMD3-203ENST00000343508 ELOVL4Q9GZR5 314 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 DEFB129Q9H1M3 183 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 EPB41L4BQ9H329 900 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 LMCD1Q9NZU5 365 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 ZNF112Q9UJU3 913 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 ERGIC3Q9Y282 383 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 ARIH1Q9Y4X5 557 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-203ENST00000343508 C2CD4BA6NLJ0 364 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 AZIN1O14977 448 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 ITM2AO43736 263 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 RAMP2O60895 175 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 PRKAR1AP10644 381 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 MPSTP25325 297 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 PSMA1P25786 263 aaKnown RBP4.8□□□□□ -1.64
CSMD3-203ENST00000343508 ATP6V0D1P61421 351 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 MRPS5P82675 430 aaKnown RBP4.8□□□□□ -1.64
CSMD3-203ENST00000343508 ECT2LQ008S8 904 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 MED22Q15528 200 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 LY6KQ17RY6 165 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 FAM156AQ8NDB6 213 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 DDX1Q92499 740 aaKnown RBP4.8□□□□□ -1.64
CSMD3-203ENST00000343508 HDAC10Q969S8 669 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 ADAMTS10Q9H324 1103 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 PIDD1Q9HB75 910 aa4.8□□□□□ -1.64
CSMD3-203ENST00000343508 LOC100130705A0A1B0GUX0 176 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 H3BNH8 94 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 CLPXO76031 633 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 LINC00032P0C843 101 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 CSH1P0DML2 217 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 CSH2P0DML3 217 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 HTR7P34969 479 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 PTPN9P43378 593 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 OGFRL1Q5TC84 451 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-203ENST00000343508 CYS1Q717R9 158 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 TBC1D19Q8N5T2 526 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 REPS2Q8NFH8 660 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 RPRD1AQ96P16 312 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-203ENST00000343508 MROH8Q9H579 483 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 ZDHHC7Q9NXF8 308 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 SNTG2Q9NY99 539 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 BTN3A3O00478 584 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 TMEM63AO94886 807 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 FARP2O94887 1054 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-203ENST00000343508 PARNO95453 639 aaKnown RBP4.79□□□□□ -1.64
CSMD3-203ENST00000343508 CPSF4O95639 269 aaKnown RBP4.79□□□□□ -1.64
CSMD3-203ENST00000343508 GUCA1CO95843 209 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 LTFP02788 710 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 UROSP10746 265 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 THRBP10828 461 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 HOXA10P31260 410 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-203ENST00000343508 SLC11A2P49281 568 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 THOP1P52888 689 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 ZNF284Q2VY69 593 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 DGKKQ5KSL6 1271 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 SLC9A4Q6AI14 798 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 FAM92BQ6ZTR7 304 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 ARMC8Q8IUR7 673 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 HS6ST3Q8IZP7 471 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 TWIST2Q8WVJ9 160 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 TP53INP1Q96A56 240 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 FBXL18Q96ME1 805 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 ZYG11BQ9C0D3 744 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 PSME2Q9UL46 239 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 B3GAT3O94766 335 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 NELFEP18615 380 aaKnown RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms