RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ACAT2Q9BWD1 397 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 RC3H2Q9HBD1 1191 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 HRASLS2Q9NWW9 162 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 TUBGCP4Q9UGJ1 667 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 GNPTGQ9UJJ9 305 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 C15orf38-AP3S2A0A0A6YYH1 394 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 SPAARA0A1B0GVQ0 90 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 EEF1E1-BLOC1S5C9J1V9 151 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 EEF1E1O43324 174 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 B4GALT2O60909 372 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 KRT6AP02538 564 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 KRT6BP04259 564 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 OR12D1P0DN82 309 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 TROVE2P10155 538 aaKnown RBP eCLIP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CTPS1P17812 591 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CD27P26842 260 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 KRT6CP48668 564 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 ADAM15Q13444 863 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 USP10Q14694 798 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 ECM1Q16610 540 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 TRIM68Q6AZZ1 485 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 TMEM207Q6UWW9 146 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CEP97Q8IW35 865 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 SLC44A3Q8N4M1 653 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 DNAJB14Q8TBM8 379 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 KAT2BQ92831 832 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 TUBGCP3Q96CW5 907 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 PHACTR1Q9C0D0 580 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 KLHL25Q9H0H3 589 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 EPB41L1Q9H4G0 881 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 OBP2AQ9NY56 170 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CALCOCO1Q9P1Z2 691 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 N6AMT1Q9Y5N5 214 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CLIC4Q9Y696 253 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 KIAA1210Q9ULL0 1709 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 TMEM150BA6NC51 233 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 FAM86B1E9PN63 330 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 GFRA2O00451 464 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 RAD51BO15315 384 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CSO75390 466 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 SNX4O95219 450 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 RPLP0P05388 317 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 FAM86B2P0C5J1 330 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 ZNF8P17098 575 aaPredicted RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 TYK2P29597 1187 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 PIK3CGP48736 1102 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 ERVFC1P60507 584 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 VAC14Q08AM6 782 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 BHLHB9Q6PI77 547 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CHSY3Q70JA7 882 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 ADGRA1Q86SQ6 560 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 DNAAF5Q86Y56 855 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 MCUR1Q96AQ8 359 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 PRMT1Q99873 361 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 HERPUD2Q9BSE4 406 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 UPF3AQ9H1J1 476 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 EML4Q9HC35 981 aaKnown RBP8.43□□□□□ -1.06
HMGB1-203ENST00000341423 CTNNAL1Q9UBT7 734 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 DUSP12Q9UNI6 340 aa8.43□□□□□ -1.06
HMGB1-203ENST00000341423 SYCE1LA8MT33 242 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 FAM155AB1AL88 458 aaPredicted RBP8.42□□□□□ -1.06
HMGB1-203ENST00000341423 MASP2O00187 686 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 HSPA4LO95757 839 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 LSM8O95777 96 aaKnown RBP8.42□□□□□ -1.06
HMGB1-203ENST00000341423 NTRK1P04629 796 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 IRF2P14316 349 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 FDPSP14324 419 aaKnown RBP8.42□□□□□ -1.06
HMGB1-203ENST00000341423 TCEA1P23193 301 aaKnown RBP8.42□□□□□ -1.06
HMGB1-203ENST00000341423 UQCRC1P31930 480 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 STXBP1P61764 594 aaKnown RBP8.42□□□□□ -1.06
HMGB1-203ENST00000341423 PARP15Q460N3 678 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 TBCELQ5QJ74 424 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 ZDHHC1Q8WTX9 485 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 IRGQQ8WZA9 623 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 MIEF2Q96C03 454 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 MUCL1Q96DR8 90 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 MAGEH1Q9H213 219 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 VCXQ9H320 206 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 PNO1Q9NRX1 252 aaKnown RBP8.42□□□□□ -1.06
HMGB1-203ENST00000341423 RIC8BQ9NVN3 520 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 DNAJB4Q9UDY4 337 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 RWDD2AQ9UIY3 292 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 SPEF1Q9Y4P9 236 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 SGTAO43765 313 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 ADAMTS4O75173 837 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 APRTP07741 180 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 DRD2P14416 443 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 SOX9P48436 509 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 CCT5P48643 541 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 TLR1Q15399 786 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 TRADDQ15628 312 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 IFT20Q8IY31 132 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 UNC5BQ8IZJ1 945 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 ATP6V1C2Q8NEY4 427 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 RXFP2Q8WXD0 754 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 ART4Q93070 314 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 RAD51AP1Q96B01 352 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 HIST1H2AAQ96QV6 131 aa8.42□□□□□ -1.06
HMGB1-203ENST00000341423 CEP250Q9BV73 2442 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms