RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ACCSLQ4AC99 568 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 RARS2Q5T160 578 aaKnown RBP13.42□□□□□ -0.26
HMGB1-202ENST00000339872 C22orf39Q6P5X5 142 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 ZCCHC23Q6ZST2 131 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 GALNT7Q86SF2 657 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 TNS4Q8IZW8 715 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 ZNF557Q8N988 423 aaPredicted RBP13.42□□□□□ -0.26
HMGB1-202ENST00000339872 OR2AP1Q8NGE2 309 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 PPP1R14CQ8TAE6 165 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 LRRC3BQ96PB8 259 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 OMDQ99983 421 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 NPHS2Q9NP85 383 aa13.42□□□□□ -0.26
HMGB1-202ENST00000339872 ATXN2Q99700 1313 aaKnown RBP13.41□□□□□ -0.26
HMGB1-202ENST00000339872 A0A0U1RQS6 177 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 BMP1P13497 986 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 VIPR2P41587 438 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 CSNK1DP48730 415 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 SNRPD1P62314 119 aaKnown RBP13.41□□□□□ -0.26
HMGB1-202ENST00000339872 SEMA3AQ14563 771 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 RAB30Q15771 203 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 RAB3IL1Q8TBN0 382 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 KCTD4Q8WVF5 259 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 RSPRY1Q96DX4 576 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 ATP13A3Q9H7F0 1226 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 DUS2Q9NX74 493 aaKnown RBP13.41□□□□□ -0.26
HMGB1-202ENST00000339872 HACD3Q9P035 362 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 MARK1Q9P0L2 795 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 KLHL14Q9P2G3 628 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 COPG2Q9UBF2 871 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 ACOT9Q9Y305 439 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 CEP290O15078 2479 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 CXorf51AA0A1B0GTR3 108 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 RFXAPO00287 272 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 TRIM24O15164 1050 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 DNAJC6O75061 913 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 ALPIP09923 528 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 PRSS56P0CW18 603 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 TROVE2P10155 538 aaKnown RBP eCLIP13.41□□□□□ -0.26
HMGB1-202ENST00000339872 CRABP2P29373 138 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 ECT2LQ008S8 904 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 KCNC3Q14003 757 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 DBN1Q16643 649 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 CES4AQ5XG92 561 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 TRIM68Q6AZZ1 485 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 AFTPHQ6ULP2 937 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 CCDC121Q6ZUS5 278 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 C10orf107Q8IVU9 208 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 NPAS3Q8IXF0 933 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 GPR150Q8NGU9 434 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 PIH1D2Q8WWB5 315 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 OLFM1Q99784 485 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 C1QTNF1Q9BXJ1 281 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 NMRAL1Q9HBL8 299 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 BPIFA1Q9NP55 256 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 CDH22Q9UJ99 828 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 FNDC3AQ9Y2H6 1198 aaKnown RBP13.41□□□□□ -0.26
HMGB1-202ENST00000339872 CRYL1Q9Y2S2 319 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 ZNF711Q9Y462 761 aa13.41□□□□□ -0.26
HMGB1-202ENST00000339872 TRAFD1O14545 582 aaPredicted RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 STX7O15400 261 aaKnown RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 SOCS5O75159 536 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 CPA3P15088 417 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 OGNP20774 298 aaKnown RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 SP100P23497 879 aaPredicted RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 PMLP29590 882 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 SERPINA4P29622 427 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 WEE1P30291 646 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 GLRBP48167 497 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 DHCR24Q15392 516 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 TCEAL5Q5H9L2 206 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 HECTD2Q5U5R9 776 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 MBLAC2Q68D91 279 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 GET4Q7L5D6 327 aaPredicted RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 SDCCAG8Q86SQ7 713 aaPredicted RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 ADIPOR2Q86V24 386 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 CENPLQ8N0S6 344 aaPredicted RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 TTC30BQ8N4P2 665 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 GPR63Q9BZJ6 419 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 FKBPLQ9UIM3 349 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 RUVBL2Q9Y230 463 aaKnown RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 A0A087X1B8 175 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 CCT8L1PA6NM43 557 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 HTRA2O43464 458 aaPredicted RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 CYP17A1P05093 508 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 FGF3P11487 239 aaPredicted RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 FSHRP23945 695 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 STC1P52823 247 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 SULT2A1Q06520 285 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 STX3Q13277 289 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 DMC1Q14565 340 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 FAM78AQ5JUQ0 283 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 LYSMD3Q7Z3D4 306 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 YTHDF3Q7Z739 585 aaKnown RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 AHI1Q8N157 1196 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 OSCP1Q8WVF1 389 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 MYLIPQ8WY64 445 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 ISG20Q96AZ6 181 aaKnown RBP13.4□□□□□ -0.26
HMGB1-202ENST00000339872 TSPAN17Q96FV3 270 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 SCYL1Q96KG9 808 aa13.4□□□□□ -0.26
HMGB1-202ENST00000339872 RMDN2Q96LZ7 410 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms