RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 BSNDQ8WZ55 320 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 ATXN3LQ9H3M9 355 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 XPR1Q9UBH6 696 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 TRPC4Q9UBN4 977 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 PRELID1Q9Y255 219 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 PQBP1O60828 265 aaKnown RBP11.54□□□□□ -0.56
VPS39-201ENST00000318006 H6PDO95479 791 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 RAB10P61026 200 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 CYP4F2P78329 520 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 CYP4F3Q08477 520 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 INTS11Q5TA45 600 aaKnown RBP11.54□□□□□ -0.56
VPS39-201ENST00000318006 NEK5Q6P3R8 708 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 VN1R5Q7Z5H4 357 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 RAB2BQ8WUD1 216 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 LPGAT1Q92604 370 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 VPS35Q96QK1 796 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 ZNF670Q9BS34 389 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 MARCH7Q9H992 704 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 COL20A1Q9P218 1284 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 ZMYM5Q9UJ78 669 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 PMF1-BGLAPU3KQ54 211 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 RGPD1P0DJD0 1748 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 PSMD11O00231 422 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 DHFRP00374 187 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 POLR2EP19388 210 aaKnown RBP11.54□□□□□ -0.56
VPS39-201ENST00000318006 FECHP22830 423 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 TUFMP49411 452 aaKnown RBP11.54□□□□□ -0.56
VPS39-201ENST00000318006 CLCN5P51795 746 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 ALFQ53S48 1182 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 DDI2Q5TDH0 399 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 PMF1Q6P1K2 205 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 GPSM1Q86YR5 675 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 CNTD1Q8N815 330 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 PIK3C3Q8NEB9 887 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 MAF1Q9H063 256 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 SLITRK2Q9H156 845 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 WDR55Q9H6Y2 383 aaPredicted RBP11.54□□□□□ -0.56
VPS39-201ENST00000318006 SALL4Q9UJQ4 1053 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 GTF2A1LQ9UNN4 478 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 B4GALT4O60513 344 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 IDO1P14902 403 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 CAPGP40121 348 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 PTSQ03393 145 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 GCNT7Q6ZNI0 430 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 AHI1Q8N157 1196 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 CBR4Q8N4T8 237 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 PPTC7Q8NI37 304 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 OMDQ99983 421 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 KIFC1Q9BW19 673 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 CRISPLD1Q9H336 500 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 HMX1Q9NP08 348 aaPredicted RBP11.53□□□□□ -0.56
VPS39-201ENST00000318006 PLK2Q9NYY3 685 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 COG5Q9UP83 839 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 CRYBB1P53674 252 aaPredicted RBP11.53□□□□□ -0.56
VPS39-201ENST00000318006 PSMD4P55036 377 aaKnown RBP11.53□□□□□ -0.56
VPS39-201ENST00000318006 PRKCQQ04759 706 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 ADGRE1Q14246 886 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 FAM131AQ6UXB0 335 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 C10orf53Q8N6V4 93 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 RASSF5Q8WWW0 418 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 ARMC7Q9H6L4 198 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 POMPQ9Y244 141 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 SAMHD1Q9Y3Z3 626 aaKnown RBP11.53□□□□□ -0.56
VPS39-201ENST00000318006 FAM240BA0A1B0GVZ2 78 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 FGF10O15520 208 aaPredicted RBP11.53□□□□□ -0.56
VPS39-201ENST00000318006 UGT2B11O75310 529 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 TFEBP19484 476 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 MMP8P22894 467 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 RPS9P46781 194 aaKnown RBP11.53□□□□□ -0.56
VPS39-201ENST00000318006 ECT2LQ008S8 904 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 CAMK2GQ13555 558 aaPredicted RBP11.53□□□□□ -0.56
VPS39-201ENST00000318006 CCNYL2Q5T2Q4 361 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 GK5Q6ZS86 529 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 LGI2Q8N0V4 545 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 CLYBLQ8N0X4 340 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 NKX2-3Q8TAU0 364 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 TTYH3Q9C0H2 523 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 MUC13Q9H3R2 512 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 SMPD4Q9NXE4 827 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 MARCH2Q9P0N8 246 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 PCDHB12Q9Y5F1 795 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 RPTORQ8N122 1335 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 RGPD5Q99666 1765 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 E7ENX8 843 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 MLYCDO95822 493 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 FADS2O95864 444 aaKnown RBP11.53□□□□□ -0.56
VPS39-201ENST00000318006 PGK1P00558 417 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 CCNB1P14635 433 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 SKIV2LQ15477 1246 aaKnown RBP11.53□□□□□ -0.56
VPS39-201ENST00000318006 MED22Q15528 200 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 KLHDC10Q6PID8 442 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 SYT12Q8IV01 421 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 C12orf29Q8N999 325 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 HELQQ8TDG4 1101 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 CLEC4DQ8WXI8 215 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 MLPHQ9BV36 600 aaPredicted RBP11.53□□□□□ -0.56
VPS39-201ENST00000318006 NIFKQ9BYG3 293 aaKnown RBP11.53□□□□□ -0.56
VPS39-201ENST00000318006 HSD3B7Q9H2F3 369 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 TOR4AQ9NXH8 423 aa11.53□□□□□ -0.56
VPS39-201ENST00000318006 ZNF224Q9NZL3 707 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms