RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 RFC2P35250 354 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 CHI3L1P36222 383 aaPredicted RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 ZNF827Q17R98 1081 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 SLC26A9Q7LBE3 791 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 C1orf74Q96LT6 269 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 OR52B2Q96RD2 323 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 TMEM79Q9BSE2 394 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 TLR10Q9BXR5 811 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 ZNF282Q9UDV7 671 aaPredicted RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 CLDN25C9JDP6 229 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 GOLGA8SH3BPF8 625 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 NCK2O43639 380 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 ANXA1P04083 346 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 CPB1P15086 417 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 AMPD1P23109 780 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 RPL10P27635 214 aaKnown RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 SRSF11Q05519 484 aaKnown RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 ZNF321PQ8N8H1 164 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 ZNF527Q8NB42 609 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 CLHC1Q8NHS4 586 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 RHEBL1Q8TAI7 183 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 MED11Q9P086 117 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 DLGAP2Q9P1A6 1054 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 NUFIP1Q9UHK0 495 aaKnown RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 PTGER3P43115 390 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 SLCO1A2P46721 670 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 GRIK3Q13003 919 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 EIF3MQ7L2H7 374 aaKnown RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 OR4C15Q8NGM1 316 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 LENG1Q96BZ8 264 aaPredicted RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 MCRS1Q96EZ8 462 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 REXO5Q96IC2 774 aaKnown RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 ADI1Q9BV57 179 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 F8W810 466 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 NDUFB10O96000 172 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 SLC6A2P23975 617 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 SEMA3AQ14563 771 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 RSU1Q15404 277 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 USP17L6PQ6QN14 398 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 AHI1Q8N157 1196 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 ITFG1Q8TB96 612 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 DDX17Q92841 729 aaKnown RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 PPP1R10Q96QC0 940 aaKnown RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 PDCD10Q9BUL8 212 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 SLC12A4Q9UP95 1085 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 H3BRB1 525 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 GATBO75879 557 aaKnown RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 BCAS2O75934 225 aaPredicted RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 ZNF23P17027 643 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 CD58P19256 250 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 BRAT1Q6PJG6 821 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 TMEM17Q86X19 198 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 LPIN3Q9BQK8 851 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 TUT1Q9H6E5 874 aaKnown RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 CISHQ9NSE2 258 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 GGA3Q9NZ52 723 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 CLIC5Q9NZA1 410 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 SCML1Q9UN30 329 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 ARFGEF1Q9Y6D6 1849 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 FADS2P1A8MWK0 482 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 TULP2O00295 520 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 SNPHO15079 494 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 NME5P56597 212 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 GNA12Q03113 381 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 HSF2Q03933 536 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 RASGEF1BQ0VAM2 473 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 PGM5Q15124 567 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 SPDYE7PQ495Y7 208 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 FNDC5Q8NAU1 212 aa4.03□□□□□ -1.76
USH2A-201ENST00000307340 RANBP3Q9H6Z4 567 aaPredicted RBP4.03□□□□□ -1.76
USH2A-201ENST00000307340 NOTOA8MTQ0 251 aa4.03□□□□□ -1.77
USH2A-201ENST00000307340 MSH4O15457 936 aa4.03□□□□□ -1.77
USH2A-201ENST00000307340 TRMUO75648 421 aaKnown RBP4.03□□□□□ -1.77
USH2A-201ENST00000307340 CLTBP09497 229 aa4.03□□□□□ -1.77
USH2A-201ENST00000307340 ETS1P14921 441 aa4.03□□□□□ -1.77
USH2A-201ENST00000307340 AP2S1P53680 142 aaPredicted RBP4.03□□□□□ -1.77
USH2A-201ENST00000307340 SCRN3Q0VDG4 424 aa4.03□□□□□ -1.77
USH2A-201ENST00000307340 TDGQ13569 410 aa4.03□□□□□ -1.77
USH2A-201ENST00000307340 CDO1Q16878 200 aa4.03□□□□□ -1.77
USH2A-201ENST00000307340 DDI2Q5TDH0 399 aa4.03□□□□□ -1.77
USH2A-201ENST00000307340 GPR65Q8IYL9 337 aa4.03□□□□□ -1.77
USH2A-201ENST00000307340 GDPD5Q8WTR4 605 aa4.03□□□□□ -1.77
USH2A-201ENST00000307340 MIEF2Q96C03 454 aa4.03□□□□□ -1.77
USH2A-201ENST00000307340 CYP2S1Q96SQ9 504 aa4.03□□□□□ -1.77
USH2A-201ENST00000307340 B3GAT3O94766 335 aa4.02□□□□□ -1.77
USH2A-201ENST00000307340 MYL9P24844 172 aa4.02□□□□□ -1.77
USH2A-201ENST00000307340 ALDH18A1P54886 795 aaKnown RBP4.02□□□□□ -1.77
USH2A-201ENST00000307340 HNRNPDQ14103 355 aaKnown RBP4.02□□□□□ -1.77
USH2A-201ENST00000307340 GRHL2Q6ISB3 625 aa4.02□□□□□ -1.77
USH2A-201ENST00000307340 NEPROQ6NW34 567 aa4.02□□□□□ -1.77
USH2A-201ENST00000307340 ERI1Q8IV48 349 aaKnown RBP4.02□□□□□ -1.77
USH2A-201ENST00000307340 RYBPQ8N488 228 aaPredicted RBP4.02□□□□□ -1.77
USH2A-201ENST00000307340 CHAC2Q8WUX2 184 aa4.02□□□□□ -1.77
USH2A-201ENST00000307340 SLC35C1Q96A29 364 aa4.02□□□□□ -1.77
USH2A-201ENST00000307340 CRISPLD1Q9H336 500 aa4.02□□□□□ -1.77
USH2A-201ENST00000307340 INTS13Q9NVM9 706 aa4.02□□□□□ -1.77
USH2A-201ENST00000307340 SH3D21A4FU49 640 aa4.02□□□□□ -1.77
USH2A-201ENST00000307340 PDLIM1O00151 329 aa4.02□□□□□ -1.77
USH2A-201ENST00000307340 MMAAQ8IVH4 418 aaKnown RBP4.02□□□□□ -1.77
USH2A-201ENST00000307340 LRRC3Q9BY71 257 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms