RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 FAM47E-STBD1D6RA91 191 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 LTFP02788 710 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 PTP4A2Q12974 167 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 APOFQ13790 326 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 TBCELQ5QJ74 424 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 C10orf120Q5SQS8 335 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 SEL1L3Q68CR1 1132 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 MIB1Q86YT6 1006 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 RAVER1Q8IY67 606 aaKnown RBP10.95□□□□□ -0.66
LSM3-201ENST00000306024 NKD2Q969F2 451 aaPredicted RBP10.95□□□□□ -0.66
LSM3-201ENST00000306024 DCDC2Q9UHG0 476 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 ZNHIT2Q9UHR6 403 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 ARIH1Q9Y4X5 557 aaPredicted RBP10.95□□□□□ -0.66
LSM3-201ENST00000306024 HEATR9A2RTY3 570 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 IDH3BO43837 385 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 VAPBO95292 243 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 TSHRP16473 764 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 MIPP30301 263 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 NRLP54845 237 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 HTRA1Q92743 480 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 TMEM209Q96SK2 561 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 TMEM175Q9BSA9 504 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 DGCR6LQ9BY27 220 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 TLK1Q9UKI8 766 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 TTLL3Q9Y4R7 772 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 INSL6Q9Y581 213 aa10.95□□□□□ -0.66
LSM3-201ENST00000306024 SYCE1LA8MT33 242 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 PAPSS1O43252 624 aaPredicted RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 ATE1O95260 518 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 YWHAQP27348 245 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 RPL10P27635 214 aaKnown RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 NDUFV1P49821 464 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 DNASE1L3Q13609 305 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 INPP5AQ14642 412 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 TIGD2Q4W5G0 525 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 BOLA3Q53S33 107 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 PGM2L1Q6PCE3 622 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 KCTD8Q6ZWB6 473 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 PDZD4Q76G19 769 aaPredicted RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 OFCC1Q8IZS5 231 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 CCNYQ8ND76 341 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 TRIM43Q96BQ3 446 aaPredicted RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 CASD1Q96PB1 797 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 NPAS2Q99743 824 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 TRIM15Q9C019 465 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 GBA3Q9H227 469 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 FBXO44Q9H4M3 255 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 IL1RL2Q9HB29 575 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 PRRC2BQ5JSZ5 2229 aaKnown RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 TRIM38O00635 465 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 TOR1BO14657 336 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 AQP9O43315 295 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 RNASEH2AO75792 299 aaKnown RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 CCDC159P0C7I6 412 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 TCF4P15884 667 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 CRHR1P34998 444 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 GABRB2P47870 512 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 NKX2-5P52952 324 aaPredicted RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 WDR5P61964 334 aaKnown RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 PPP2R2DQ66LE6 453 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 CLEC20AQ6ZU45 233 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 IFNEQ86WN2 208 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 CCDC117Q8IWD4 279 aaPredicted RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 ZC3H7AQ8IWR0 971 aaKnown RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 DHRSXQ8N5I4 330 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 NAT8LQ8N9F0 302 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 AUTS2Q8WXX7 1259 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 ERVK-11Q9UQG0 969 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 TET1Q8NFU7 2136 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 CARNS1A5YM72 827 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 CXorf49A8MYA2 514 aaPredicted RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 EIF3FO00303 357 aaPredicted RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 LRG1P02750 347 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 SCN1AP35498 2009 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 STX1BP61266 288 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 MRPS5P82675 430 aaKnown RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 RPS6KA2Q15349 733 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 NANOGP8Q6NSW7 305 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 CAMK1DQ8IU85 385 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 IGDCC3Q8IVU1 814 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 CPNE9Q8IYJ1 553 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 WDTC1Q8N5D0 677 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 FBXO22Q8NEZ5 403 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 SPPL2BQ8TCT7 592 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 CLEC4CQ8WTT0 213 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 CHPT1Q8WUD6 406 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 POPDC2Q9HBU9 364 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 MID2Q9UJV3 735 aa10.94□□□□□ -0.66
LSM3-201ENST00000306024 CAB39Q9Y376 341 aaPredicted RBP10.94□□□□□ -0.66
LSM3-201ENST00000306024 GOLGA8CPA6NN73 597 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 TMEM114B3SHH9 223 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 TPP1O14773 563 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 SOAT2O75908 522 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 CXCL14O95715 111 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 ALBP02768 609 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 ZNF143P52747 638 aaPredicted RBP10.93□□□□□ -0.66
LSM3-201ENST00000306024 CD300CQ08708 224 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 ABRAXAS1Q6UWZ7 409 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 ATG14Q6ZNE5 492 aa10.93□□□□□ -0.66
LSM3-201ENST00000306024 OR10T2Q8NGX3 314 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms