RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SYCP1Q15431 976 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 HSP90AA4PQ58FG1 418 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 LIPIQ6XZB0 460 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 SRLQ86TD4 932 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 VASH2Q86V25 355 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 PHF13Q86YI8 300 aaPredicted RBP14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 CAMK1DQ8IU85 385 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 PLA2G15Q8NCC3 412 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 CCDC112Q8NEF3 446 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 EIF3CQ99613 913 aaKnown RBP14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 DPYSL5Q9BPU6 564 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 CNPY3Q9BT09 278 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 TMEM168Q9H0V1 697 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 GANQ9H2C0 597 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 LRRC19Q9H756 370 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 PDFQ9HBH1 243 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 CYP4F12Q9HCS2 524 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 FOXJ2Q9P0K8 574 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 SEPT3Q9UH03 358 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 FZD10Q9ULW2 581 aa14.83□□□□□ -0.04
CCDC88B-201ENST00000301897 PRSS38A1L453 326 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 RHPN2P1A8MT19 583 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 C9orf172C9J069 976 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 PALMO75781 387 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 NFKBIAP25963 317 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 ETV5P41161 510 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 GPR3P46089 330 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 JAM2P57087 298 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 TPI1P60174 286 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 POLR2FP61218 127 aaKnown RBP14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 B4GALNT1Q00973 533 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 NSUN2Q08J23 767 aaKnown RBP eCLIP14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 ILF3Q12906 894 aaKnown RBP eCLIP14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 SRSF6Q13247 344 aaKnown RBP14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 TRA2AQ13595 282 aaKnown RBP eCLIP14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 RFTN1Q14699 578 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 CLEC16AQ2KHT3 1053 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 AFMIDQ63HM1 303 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 DNAJC24Q6P3W2 148 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 DPPA4Q7L190 304 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 ZNF438Q7Z4V0 828 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 NETO2Q8NC67 525 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 GPBAR1Q8TDU6 330 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 ECHDC3Q96DC8 303 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 TAAR9Q96RI9 348 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 GSDMCQ9BYG8 508 aa14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 PHPT1Q9NRX4 125 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-201ENST00000301897 SDK2Q58EX2 2172 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 A0A1W2PQ67 120 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 CYSRT1A8MQ03 144 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 CCP110O43303 1012 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 MYCLP1P12525 358 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 CCNB1P14635 433 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 RENBPP51606 427 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 BIRC2Q13490 618 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 NR1D2Q14995 579 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 DPCR1Q3MIW9 517 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 FKBP15Q5T1M5 1219 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 PNCKQ6P2M8 343 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 C17orf82Q86X59 251 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 FUCA2Q9BTY2 467 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 CINPQ9BW66 212 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 SEMA6CQ9H3T2 930 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 CLSTN2Q9H4D0 955 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 MRPL40Q9NQ50 206 aaKnown RBP14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 TRNAU1APQ9NX07 287 aaKnown RBP14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 MOSPD1Q9UJG1 213 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 TUBD1Q9UJT1 453 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 PCDHGA3Q9Y5H0 932 aa14.81□□□□□ -0.04
CCDC88B-201ENST00000301897 J3KR12 359 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 CAPN5O15484 640 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 ALDH4A1P30038 563 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 AP1S1P61966 158 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 NFKB2Q00653 900 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 RALGDSQ12967 914 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 C16orf72Q14CZ0 275 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 ACOX1Q15067 660 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 AMZ1Q400G9 498 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 KCTD16Q68DU8 428 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 BORAQ6PGQ7 559 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 MON1BQ7L1V2 547 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 TMPRSS9Q7Z410 1059 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 ZSWIM9Q86XI8 627 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 TSEN2Q8NCE0 465 aaKnown RBP14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 AGBL5Q8NDL9 886 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 ZDHHC1Q8WTX9 485 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 SPOCK2Q92563 424 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 CATSPER2Q96P56 530 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 MCEEQ96PE7 176 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 ASPSCR1Q9BZE9 553 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 CDH19Q9H159 772 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 CARS2Q9HA77 564 aaKnown RBP14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 NLRC4Q9NPP4 1024 aa14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 FAM207AQ9NSI2 230 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 SAMSN1Q9NSI8 373 aaKnown RBP14.8□□□□□ -0.04
CCDC88B-201ENST00000301897 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 TEX33O43247 280 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 B4GAT1O43505 415 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 PRKCGP05129 697 aa14.79□□□□□ -0.04
CCDC88B-201ENST00000301897 PAPOLAP51003 745 aaKnown RBP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms