RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 CFAP61Q8NHU2 1237 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 WBP2Q969T9 261 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 VWCEQ96DN2 955 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 EXOC2Q96KP1 924 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 TRPC7Q9HCX4 862 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 MRPL17Q9NRX2 175 aaKnown RBP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 NLE1Q9NVX2 485 aaPredicted RBP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 SMPD4Q9NXE4 827 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 NKX1-2Q9UD57 310 aaPredicted RBP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 ZDHHC2Q9UIJ5 367 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 STOML2Q9UJZ1 356 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 MAFFQ9ULX9 164 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 CRYL1Q9Y2S2 319 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 OBSL1O75147 1896 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 H0Y626 953 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 GRID2O43424 1007 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 DCXO43602 365 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 TBL1XO60907 577 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 CLTBP09497 229 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 TPBGLP0DKB5 382 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 FDXRP22570 491 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 PMLP29590 882 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 DEFB103AP81534 67 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 PTPRCAPQ14761 206 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 TAF1AQ15573 450 aaPredicted RBP12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 KHDC1Q4VXA5 237 aaKnown RBP12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 PABPC1LQ4VXU2 614 aaKnown RBP12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 GLT6D1Q7Z4J2 308 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 NET1Q7Z628 596 aaPredicted RBP12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 TMCO2Q7Z6W1 182 aaPredicted RBP12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 ITIH5Q86UX2 942 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 SLC22A9Q8IVM8 553 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 POU5F2Q8N7G0 328 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 STMN2Q93045 179 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 CDKN2AIPNLQ96HQ2 116 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 OR52B2Q96RD2 323 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 THTPAQ9BU02 230 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 BEGAINQ9BUH8 593 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 TDRD1Q9BXT4 1180 aaKnown RBP12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 ADGRE3Q9BY15 652 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 SHCBP1LQ9BZQ2 653 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 EML4Q9HC35 981 aaKnown RBP12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 CDYLQ9Y232 598 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 C15orf41Q9Y2V0 281 aa12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.96□□□□□ -0.33
SPTLC1-201ENST00000262554 BPTFQ12830 3046 aa12.96□□□□□ -0.34
SPTLC1-201ENST00000262554 GOLGA8QA0A0J9YX86 632 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 GOLGA8OA6NCC3 632 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 TRPC5OSA6NMA1 111 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 C2orf81A6NN90 581 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 F8W8V4 182 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 GOLGA8NF8WBI6 632 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 H0Y3Z8 333 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 NEMP1O14524 444 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 IPO13O94829 963 aaKnown RBP12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 WISP3O95389 354 aaPredicted RBP12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 SLC4A1P02730 911 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 ZNF140P52738 457 aaPredicted RBP12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 STC1P52823 247 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 NAA25Q14CX7 972 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 AFTPHQ6ULP2 937 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 TMEM150AQ86TG1 271 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 ULK2Q8IYT8 1036 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 PHTF2Q8N3S3 785 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 CARNMT1Q8N4J0 409 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 PNPLA1Q8N8W4 532 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 HJURPQ8NCD3 748 aaPredicted RBP12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 ANKRD49Q8WVL7 239 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 AUTS2Q8WXX7 1259 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 CYP2S1Q96SQ9 504 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 CCDC28BQ9BUN5 200 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 NUF2Q9BZD4 464 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 WDR55Q9H6Y2 383 aaPredicted RBP12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 RC3H2Q9HBD1 1191 aaKnown RBP12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 POPDC3Q9HBV1 291 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 INTS10Q9NVR2 710 aaKnown RBP12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 SPO11Q9Y5K1 396 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 A8MT66 165 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 MEI4A8MW99 385 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 ZBTB14O43829 449 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 TMCC1O94876 653 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 F11P03951 625 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 CPOXP36551 454 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 ARF5P84085 180 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 CREMQ03060 361 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 KLF10Q13118 480 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 SEMA3AQ14563 771 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 TYSND1Q2T9J0 566 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 LSM12Q3MHD2 195 aaKnown RBP12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 ACCSLQ4AC99 568 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 ACSBG2Q5FVE4 666 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 GPR158Q5T848 1215 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 AFAP1L2Q8N4X5 818 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 LPCAT1Q8NF37 534 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 DIS3LQ8TF46 1054 aaKnown RBP12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 WDR60Q8WVS4 1066 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 FAR2Q96K12 515 aa12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 ZFRQ96KR1 1074 aaKnown RBP12.95□□□□□ -0.34
SPTLC1-201ENST00000262554 PPP1R36Q96LQ0 422 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms