RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 IKBKEQ14164 716 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 ADRM1Q16186 407 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 MYLK3Q32MK0 819 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 PIK3R6Q5UE93 754 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 SPRYD7Q5W111 196 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 HACD2Q6Y1H2 254 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 LARP4Q71RC2 724 aaKnown RBP eCLIP18.77■□□□□ 0.62e-6■■■■□ 23.7
CPSF3-201ENST00000238112 CHERPQ8IWX8 916 aaKnown RBP18.77■□□□□ 0.6
CPSF3-201ENST00000238112 UMODL1-AS1Q8N2C9 162 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 PPWD1Q96BP3 646 aaKnown RBP18.77■□□□□ 0.6
CPSF3-201ENST00000238112 C1orf74Q96LT6 269 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 UPF3AQ9H1J1 476 aaKnown RBP18.77■□□□□ 0.6
CPSF3-201ENST00000238112 RGS18Q9NS28 235 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 PADI4Q9UM07 663 aa18.77■□□□□ 0.6
CPSF3-201ENST00000238112 CCL22O00626 93 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 SPATA31D3P0C874 917 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 RPS6KA3P51812 740 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 SLC7A2P52569 658 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 CREB5Q02930 508 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 CYTH1Q15438 398 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 KIF19Q2TAC6 998 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 MTX3Q5HYI7 312 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 TMEM207Q6UWW9 146 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 CD300LGQ6UXG3 332 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 SPATA31D4Q6ZUB0 917 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 ISCA2Q86U28 154 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 PIM3Q86V86 326 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 DHFR2Q86XF0 187 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 PCYOX1LQ8NBM8 494 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 ZFP28Q8NHY6 868 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 EXT2Q93063 718 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 SLCO4A1Q96BD0 722 aa18.77■□□□□ 0.59
CPSF3-201ENST00000238112 RBM38Q9H0Z9 239 aaKnown RBP18.77■□□□□ 0.59
CPSF3-201ENST00000238112 AGO3Q9H9G7 860 aaKnown RBP18.77■□□□□ 0.59
CPSF3-201ENST00000238112 MTF2Q9Y483 593 aaPredicted RBP18.77■□□□□ 0.59
CPSF3-201ENST00000238112 C7orf72A4D263 438 aa18.76■□□□□ 0.59
CPSF3-201ENST00000238112 MROH6A6NGR9 719 aa18.76■□□□□ 0.59
CPSF3-201ENST00000238112 TNPO2O14787 897 aaKnown RBP18.76■□□□□ 0.59
CPSF3-201ENST00000238112 S1PR4O95977 384 aa18.76■□□□□ 0.59
CPSF3-201ENST00000238112 SLC4A1P02730 911 aa18.76■□□□□ 0.59
CPSF3-201ENST00000238112 ARSDP51689 593 aa18.76■□□□□ 0.59
CPSF3-201ENST00000238112 HERVK_113P63132 956 aa18.76■□□□□ 0.59
CPSF3-201ENST00000238112 C6orf10Q5SRN2 563 aa18.76■□□□□ 0.59
CPSF3-201ENST00000238112 GDF6Q6KF10 455 aaPredicted RBP18.76■□□□□ 0.59
CPSF3-201ENST00000238112 AMIGO2Q86SJ2 522 aa18.76■□□□□ 0.59
CPSF3-201ENST00000238112 DUS3LQ96G46 650 aaKnown RBP18.76■□□□□ 0.59
CPSF3-201ENST00000238112 HAUS8Q9BT25 410 aa18.76■□□□□ 0.59
CPSF3-201ENST00000238112 ERVK-6Q9BXR3 956 aa18.76■□□□□ 0.59
CPSF3-201ENST00000238112 FBRSL1Q9HCM7 1045 aaKnown RBP18.76■□□□□ 0.59
CPSF3-201ENST00000238112 CRYL1Q9Y2S2 319 aa18.76■□□□□ 0.59
CPSF3-201ENST00000238112 MYADML2A6NDP7 307 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 OR51F1A6NGY5 319 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 SLC2A3P11169 496 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 RHOQP17081 205 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 KCNC1P48547 511 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 TUSC3Q13454 348 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 GEN1Q17RS7 908 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 UNC50Q53HI1 259 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 ARHGAP22Q7Z5H3 698 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 CLYBLQ8N0X4 340 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 OR52K2Q8NGK3 314 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 ROPN1LQ96C74 230 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 ZYG11BQ9C0D3 744 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 MARCH4Q9P2E8 410 aaPredicted RBP18.75■□□□□ 0.59
CPSF3-201ENST00000238112 CNOT6Q9ULM6 557 aaKnown RBP18.75■□□□□ 0.59
CPSF3-201ENST00000238112 TLR6Q9Y2C9 796 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 WISP3O95389 354 aaPredicted RBP18.75■□□□□ 0.59
CPSF3-201ENST00000238112 MMP2P08253 660 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 HAPLN1P10915 354 aaPredicted RBP18.75■□□□□ 0.59
CPSF3-201ENST00000238112 TXNL4AP83876 142 aaKnown RBP18.75■□□□□ 0.59
CPSF3-201ENST00000238112 NFKB2Q00653 900 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 SIRPB2Q5JXA9 342 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 C8orf82Q6P1X6 216 aaPredicted RBP18.75■□□□□ 0.59
CPSF3-201ENST00000238112 CYHR1Q6ZMK1 362 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 RYBPQ8N488 228 aaPredicted RBP18.75■□□□□ 0.59
CPSF3-201ENST00000238112 FATE1Q969F0 183 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 CIB1Q99828 191 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 SLC39A3Q9BRY0 314 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 MTG1Q9BT17 334 aaPredicted RBP18.75■□□□□ 0.59
CPSF3-201ENST00000238112 NOL11Q9H8H0 719 aaKnown RBP18.75■□□□□ 0.59
CPSF3-201ENST00000238112 THEGQ9P2T0 379 aa18.75■□□□□ 0.59
CPSF3-201ENST00000238112 UXTQ9UBK9 157 aaPredicted RBP18.75■□□□□ 0.59
CPSF3-201ENST00000238112 TTC24A2A3L6 582 aaPredicted RBP18.74■□□□□ 0.59
CPSF3-201ENST00000238112 BBIP1A8MTZ0 92 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 ZNF623O75123 536 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 ASLP04424 464 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 ITGB1P05556 798 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 CD52P31358 61 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 CDH13P55290 713 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 YWHAHQ04917 246 aaPredicted RBP18.74■□□□□ 0.59
CPSF3-201ENST00000238112 CACNB2Q08289 660 aaPredicted RBP18.74■□□□□ 0.59
CPSF3-201ENST00000238112 GNASQ5JWF2 1037 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 FAM219BQ5XKK7 198 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 KRT80Q6KB66 452 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 RAB44Q7Z6P3 723 aaPredicted RBP18.74■□□□□ 0.59
CPSF3-201ENST00000238112 TSPAN14Q8NG11 270 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 PSMG2Q969U7 264 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 PTERQ96BW5 349 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 SUSD3Q96L08 255 aa18.74■□□□□ 0.59
CPSF3-201ENST00000238112 C3orf30Q96M34 536 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms