RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 LPCAT4Q643R3 524 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 OFCC1Q8IZS5 231 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 GDPD1Q8N9F7 314 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 KDM1BQ8NB78 822 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TCTEX1D2Q8WW35 142 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 UBE2E3Q969T4 207 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF304Q9HCX3 659 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 GRHL1Q9NZI5 618 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TTLL13PA6NNM8 815 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 A8MUI8 341 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 H3BSA7 217 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SLC28A2O43868 658 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TDP2O95551 362 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 BMP6P22004 513 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 GRIK2Q13002 908 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 FBXO42Q6P3S6 717 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 IRF2BP2Q7Z5L9 587 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SRFBP1Q8NEF9 429 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 CABLES1Q8TDN4 633 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 NELL1Q92832 810 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ZFP42Q96MM3 310 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 CHMP1AQ9HD42 196 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ACTR3BQ9P1U1 418 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 NKX1-2Q9UD57 310 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 VWDEQ8N2E2 1590 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TMEM94Q12767 1356 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 K7EPI3 171 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TBX1O43435 398 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 NDUFB5O43674 189 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 CLTBP09497 229 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 EPCAMP16422 314 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 GSTM2P28161 218 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 HYIQ5T013 277 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 GPRC6AQ5T6X5 926 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 HMBOX1Q6NT76 420 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 C15orf52Q6ZUT6 534 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 RETREG3Q86VR2 466 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 OR2T12Q8NG77 320 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ZSCAN18Q8TBC5 510 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 UTP15Q8TED0 518 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PHF10Q8WUB8 498 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PELOQ9BRX2 385 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 OXCT2Q9BYC2 517 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 FBXO6Q9NRD1 293 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TAS2R13Q9NYV9 303 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PRR12Q9ULL5 1215 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 INVSQ9Y283 1065 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PLEKHA6Q9Y2H5 1048 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 MEMO1Q9Y316 297 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 WASF2Q9Y6W5 498 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SLC28A1O00337 649 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ANXA8P13928 327 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ERFP50548 548 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 RNASEH2BQ5TBB1 312 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PPP2R2DQ66LE6 453 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 GPAT2Q6NUI2 795 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 DENND5BQ6ZUT9 1274 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 C16orf86Q6ZW13 317 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 CAMKK1Q8N5S9 505 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 CDC26Q8NHZ8 85 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PFDN5Q99471 154 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SEMA6AQ9H2E6 1030 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 LRRC4CQ9HCJ2 640 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PRKAG2Q9UGJ0 569 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 NWD1Q149M9 1564 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SLC4A1P02730 911 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 XRCC1P18887 633 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 CES1P23141 567 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 IGFBP5P24593 272 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ALDH3A2P51648 485 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SLC7A2P52569 658 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 TXNL4AP83876 142 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 CYP24A1Q07973 514 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PTGR1Q14914 329 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 CLCA4Q14CN2 919 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 DLG2Q15700 870 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 VPS26BQ4G0F5 336 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 DCDC5Q6ZRR9 648 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ZSCAN5AQ9BUG6 496 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 C1QTNF1Q9BXJ1 281 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 NXF3Q9H4D5 531 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ANKMY1Q9P2S6 941 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 XPR1Q9UBH6 696 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 NR2E1Q9Y466 385 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PRAMEF33A0A0G2JMD5 474 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 HCN1O60741 890 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 PRAMEF10O60809 474 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 A1BGP04217 495 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 BMP1P13497 986 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 FBLN1P23142 703 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 RFX5P48382 616 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 LLGL1Q15334 1064 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 ZSWIM7Q19AV6 140 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 EARS2Q5JPH6 523 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 AGAP6Q5VW22 663 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 SDR16C5Q8N3Y7 309 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 DDX17Q92841 729 aaKnown RBP4.68□□□□□ -1.66
SCN1A-220ENST00000641603 COA7Q96BR5 231 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 AGAP4Q96P64 663 aa4.68□□□□□ -1.66
SCN1A-220ENST00000641603 DCSTAMPQ9H295 470 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms