RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 EFHC2Q5JST6 749 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 FOXR1Q6PIV2 292 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 CBARPQ8N350 705 aaPredicted RBP16.53■□□□□ 0.24
CLN3-255ENST00000637100 PLA2G15Q8NCC3 412 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 ENOX1Q8TC92 643 aaKnown RBP16.53■□□□□ 0.24
CLN3-255ENST00000637100 OR1E3Q8WZA6 343 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 FUBP1Q96AE4 644 aaKnown RBP16.53■□□□□ 0.24
CLN3-255ENST00000637100 SGF29Q96ES7 293 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 CNPY3Q9BT09 278 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 EPB41L5Q9HCM4 733 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 DONSONQ9NYP3 566 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.53■□□□□ 0.24
CLN3-255ENST00000637100 UBA2Q9UBT2 640 aaPredicted RBP16.53■□□□□ 0.24
CLN3-255ENST00000637100 DOLKQ9UPQ8 538 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 OR1A2Q9Y585 309 aa16.53■□□□□ 0.24
CLN3-255ENST00000637100 BOD1L1Q8NFC6 3051 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 TMEM202A6NGA9 273 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 EIF3CLB5ME19 914 aaKnown RBP16.52■□□□□ 0.24
CLN3-255ENST00000637100 J3KR12 359 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 TRAFD1O14545 582 aaPredicted RBP16.52■□□□□ 0.24
CLN3-255ENST00000637100 STAT1P42224 750 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 RGRP47804 291 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 RPL7AP62424 266 aaKnown RBP16.52■□□□□ 0.24
CLN3-255ENST00000637100 B4GALNT1Q00973 533 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 KCNC4Q03721 635 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 CLPPQ16740 277 aaPredicted RBP16.52■□□□□ 0.24
CLN3-255ENST00000637100 ERAP2Q6P179 960 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 LIPIQ6XZB0 460 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 ZNF438Q7Z4V0 828 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 SPRED1Q7Z699 444 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 CAMK1DQ8IU85 385 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 CCNJLQ8IV13 435 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 OR56A4Q8NGH8 313 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 PDXPQ96GD0 296 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 EXOC2Q96KP1 924 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 EIF3CQ99613 913 aaKnown RBP16.52■□□□□ 0.24
CLN3-255ENST00000637100 SELENOOQ9BVL4 669 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 FOXP3Q9BZS1 431 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 FGF22Q9HCT0 170 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 TAB2Q9NYJ8 693 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 SIRPGQ9P1W8 387 aa16.52■□□□□ 0.24
CLN3-255ENST00000637100 HECTD1Q9ULT8 2610 aa16.52■□□□□ 0.23
CLN3-255ENST00000637100 UNC13CQ8NB66 2214 aa16.51■□□□□ 0.23
CLN3-255ENST00000637100 A0A1W2PQC6 194 aa16.51■□□□□ 0.23
CLN3-255ENST00000637100 TERTO14746 1132 aaKnown RBP16.51■□□□□ 0.23
CLN3-255ENST00000637100 RECQL5O94762 991 aaPredicted RBP16.51■□□□□ 0.23
CLN3-255ENST00000637100 HGFP14210 728 aa16.51■□□□□ 0.23
CLN3-255ENST00000637100 XPAP23025 273 aaPredicted RBP16.51■□□□□ 0.23
CLN3-255ENST00000637100 CSRP3P50461 194 aa16.51■□□□□ 0.23
CLN3-255ENST00000637100 KRT31Q15323 416 aa16.51■□□□□ 0.23
CLN3-255ENST00000637100 C14orf28Q4W4Y0 310 aa16.51■□□□□ 0.23
CLN3-255ENST00000637100 DPPA4Q7L190 304 aa16.51■□□□□ 0.23
CLN3-255ENST00000637100 TMPRSS9Q7Z410 1059 aa16.51■□□□□ 0.23
CLN3-255ENST00000637100 SRLQ86TD4 932 aa16.51■□□□□ 0.23
CLN3-255ENST00000637100 NSMCE3Q96MG7 304 aa16.51■□□□□ 0.23
CLN3-255ENST00000637100 NLRC4Q9NPP4 1024 aa16.51■□□□□ 0.23
CLN3-255ENST00000637100 LOXL2Q9Y4K0 774 aa16.51■□□□□ 0.23
CLN3-255ENST00000637100 LRRC10BA6NIK2 292 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 PES1O00541 588 aaKnown RBP16.5■□□□□ 0.23
CLN3-255ENST00000637100 SLC28A2O43868 658 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 CREB3O43889 395 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 KELP23276 732 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 CD82P27701 267 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 ETV5P41161 510 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 SRSF6Q13247 344 aaKnown RBP16.5■□□□□ 0.23
CLN3-255ENST00000637100 SQSTM1Q13501 440 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 RD3Q7Z3Z2 195 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 SFTPA2Q8IWL1 248 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 ARHGAP12Q8IWW6 846 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 TSEN2Q8NCE0 465 aaKnown RBP16.5■□□□□ 0.23
CLN3-255ENST00000637100 GPBAR1Q8TDU6 330 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 NCAPGQ9BPX3 1015 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 SYT11Q9BT88 431 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 SLC39A8Q9C0K1 460 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 VPS16Q9H269 839 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 ATP13A3Q9H7F0 1226 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 FAM207AQ9NSI2 230 aaPredicted RBP16.5■□□□□ 0.23
CLN3-255ENST00000637100 LRIT1Q9P2V4 623 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 RNF215Q9Y6U7 377 aa16.5■□□□□ 0.23
CLN3-255ENST00000637100 C9orf172C9J069 976 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 CACNB4O00305 520 aaPredicted RBP16.49■□□□□ 0.23
CLN3-255ENST00000637100 B4GAT1O43505 415 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 JMJD7P0C870 316 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 SERPINA4P29622 427 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 PAPOLAP51003 745 aaKnown RBP16.49■□□□□ 0.23
CLN3-255ENST00000637100 OGDHQ02218 1023 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 RFTN1Q14699 578 aaPredicted RBP16.49■□□□□ 0.23
CLN3-255ENST00000637100 PNCKQ6P2M8 343 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 SCYL2Q6P3W7 929 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 USP53Q70EK8 1073 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 ZNF354CQ86Y25 554 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 NRROSQ86YC3 692 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 ARFGAP1Q8N6T3 406 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 FAM46DQ8NEK8 389 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 COQ10AQ96MF6 247 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 CMKLR1Q99788 373 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 LGR4Q9BXB1 951 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 TMEM168Q9H0V1 697 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 SYNDIG1Q9H7V2 258 aa16.49■□□□□ 0.23
CLN3-255ENST00000637100 PISDQ9UG56 409 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms