RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ANKRD40Q6AI12 368 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 DRC7Q8IY82 874 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 PATE1Q8WXA2 126 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 ARHGEF2Q92974 986 aaKnown RBP14.62□□□□□ -0.07
CLN3-249ENST00000636685 SLC35C1Q96A29 364 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 CCDC47Q96A33 483 aaKnown RBP14.62□□□□□ -0.07
CLN3-249ENST00000636685 MOCOSQ96EN8 888 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 RNF31Q96EP0 1072 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 WDCPQ9H6R7 721 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 SUDS3Q9H7L9 328 aaPredicted RBP14.62□□□□□ -0.07
CLN3-249ENST00000636685 METTL14Q9HCE5 456 aaKnown RBP14.62□□□□□ -0.07
CLN3-249ENST00000636685 APMAPQ9HDC9 416 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 ASNSD1Q9NWL6 643 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 MOSPD1Q9UJG1 213 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 TMEM184BQ9Y519 407 aaPredicted RBP14.62□□□□□ -0.07
CLN3-249ENST00000636685 DIDO1Q9BTC0 2240 aaKnown RBP14.62□□□□□ -0.07
CLN3-249ENST00000636685 HIVEP1P15822 2718 aa14.62□□□□□ -0.07
CLN3-249ENST00000636685 IGHV1OR21-1A0A087WYE8 117 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 CACNB4O00305 520 aaPredicted RBP14.61□□□□□ -0.07
CLN3-249ENST00000636685 ZW10O43264 779 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 DNAJB5O75953 348 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 LETM1O95202 739 aaPredicted RBP14.61□□□□□ -0.07
CLN3-249ENST00000636685 MYL1P05976 194 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 BMP6P22004 513 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 STAT5AP42229 794 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 GPR3P46089 330 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 FMO5P49326 533 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 CXCR3P49682 368 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 KIAA1024LP59773 190 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 MC2RQ01718 297 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 FOXD4L5Q5VV16 416 aaPredicted RBP14.61□□□□□ -0.07
CLN3-249ENST00000636685 CEACAM20Q6UY09 585 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 FAM183BPQ6ZVS7 135 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 NRROSQ86YC3 692 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 SMYD4Q8IYR2 804 aaPredicted RBP14.61□□□□□ -0.07
CLN3-249ENST00000636685 NETO2Q8NC67 525 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 FOXD4L4Q8WXT5 416 aaPredicted RBP14.61□□□□□ -0.07
CLN3-249ENST00000636685 CPXM1Q96SM3 734 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 TRIT1Q9H3H1 467 aaKnown RBP14.61□□□□□ -0.07
CLN3-249ENST00000636685 ACP6Q9NPH0 428 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 POLHQ9Y253 713 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 PCDHB3Q9Y5E6 796 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 OAS3Q9Y6K5 1087 aaKnown RBP14.61□□□□□ -0.07
CLN3-249ENST00000636685 RPS6KL1Q9Y6S9 549 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 CSMD2Q7Z408 3487 aa14.61□□□□□ -0.07
CLN3-249ENST00000636685 PDZD2O15018 2839 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 NF1P21359 2839 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 A8MU76 341 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 PPM1DO15297 605 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 DAB1O75553 588 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 SORBS2O94875 1100 aaKnown RBP14.6□□□□□ -0.07
CLN3-249ENST00000636685 DLGAP3O95886 979 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 KRT5P13647 590 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 CCNB1P14635 433 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 XPAP23025 273 aaPredicted RBP14.6□□□□□ -0.07
CLN3-249ENST00000636685 PMS2P54278 862 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 BIRC2Q13490 618 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 SQSTM1Q13501 440 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 INPP5JQ15735 1006 aaPredicted RBP14.6□□□□□ -0.07
CLN3-249ENST00000636685 BRMS1LQ5PSV4 323 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 SNAP47Q5SQN1 464 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 TMEM71Q6P5X7 295 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 ZC3H18Q86VM9 953 aaKnown RBP14.6□□□□□ -0.07
CLN3-249ENST00000636685 LMO3Q8TAP4 145 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 ZNF606Q8WXB4 792 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 C1orf74Q96LT6 269 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 KREMEN1Q96MU8 473 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 ZMYND15Q9H091 742 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 TAAR2Q9P1P5 351 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 DKK3Q9UBP4 350 aa14.6□□□□□ -0.07
CLN3-249ENST00000636685 MTORP42345 2549 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 A0A1B0GVL5 298 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 CDC14CA4D256 554 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 TNFRSF10CO14798 259 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 SLC16A3O15427 465 aaKnown RBP14.59□□□□□ -0.07
CLN3-249ENST00000636685 THAP12O43422 761 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 MED7O43513 233 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 DLSTP36957 453 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 LIG3P49916 1009 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 ELP6Q0PNE2 266 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 MEA1Q16626 185 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 OLFML1Q6UWY5 402 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 WDTC1Q8N5D0 677 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 HMCESQ96FZ2 354 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 LGR4Q9BXB1 951 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 TRIM55Q9BYV6 548 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 ZYG11BQ9C0D3 744 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 UPF2Q9HAU5 1272 aaKnown RBP14.59□□□□□ -0.07
CLN3-249ENST00000636685 PCDH12Q9NPG4 1184 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 NDFIP2Q9NV92 336 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 ARMCX3Q9UH62 379 aaPredicted RBP14.59□□□□□ -0.07
CLN3-249ENST00000636685 KCND3Q9UK17 655 aa14.59□□□□□ -0.07
CLN3-249ENST00000636685 CROCCQ5TZA2 2017 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 PRSS38A1L453 326 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 INSIG1O15503 277 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 PFKFB1P16118 471 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 AK4P27144 223 aaPredicted RBP14.58□□□□□ -0.08
CLN3-249ENST00000636685 SULT1E1P49888 294 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 GCNT1Q02742 428 aa14.58□□□□□ -0.08
CLN3-249ENST00000636685 AGERQ15109 404 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms