RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 VIPR1P32241 457 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 COILP38432 576 aaPredicted RBP19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 GRIA4P48058 902 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 SGCGQ13326 291 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 KDELC1Q6UW63 502 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 C4orf22Q6V702 233 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 IPMKQ8NFU5 416 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 GRK7Q8WTQ7 553 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 ZNF592Q92610 1267 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 PIGKQ92643 395 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 SCRN2Q96FV2 425 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 WRAP53Q9BUR4 548 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 MIR1-1HGQ9H1L0 117 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 PAK5Q9P286 719 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 NCDNQ9UBB6 729 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 B4GALT6Q9UBX8 382 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 SUSD2Q9UGT4 822 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 EIF2B4Q9UI10 523 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 PPIL1Q9Y3C6 166 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 PCDHGA5Q9Y5G8 931 aa19.2■□□□□ 0.66
SQSTM1-216ENST00000626660 OTOGLQ3ZCN5 2332 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 A0A0J9YYE9 177 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 PSMD3O43242 534 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 MMP20O60882 483 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 EPOP01588 193 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 TRBC1P01850 177 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 ELFN1P0C7U0 828 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 CTPS1P17812 591 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 FDFT1P37268 417 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 FNTAP49354 379 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 ARHGEF7Q14155 803 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 GALNT3Q14435 633 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 TMEM259Q4ZIN3 620 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 SEL1L3Q68CR1 1132 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 CCDC137Q6PK04 289 aaKnown RBP19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 RABEPKQ7Z6M1 372 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 SYT12Q8IV01 421 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 DNASE2BQ8WZ79 361 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 MCCC1Q96RQ3 725 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 TRIB3Q96RU7 358 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 MLPHQ9BV36 600 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 ZFR2Q9UPR6 939 aaKnown RBP19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 DMTF1Q9Y222 760 aa19.19■□□□□ 0.66
SQSTM1-216ENST00000626660 LRRK1Q38SD2 2015 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 A0A1W2PPC4 97 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 IGLON5A6NGN9 336 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 CAPN8A6NHC0 703 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 ANKRD66B4E2M5 251 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 C10orf142B7Z368 130 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 ALPIP09923 528 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 GNSP15586 552 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 HOXD12P35452 270 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 SEMG2Q02383 582 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 QPCTQ16769 361 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 ZNF284Q2VY69 593 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 TTC27Q6P3X3 843 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 TAB3Q8N5C8 712 aaPredicted RBP19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 KLK6Q92876 244 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 MRGPRX2Q96LB1 330 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 FICDQ9BVA6 458 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 C1QTNF7Q9BXJ2 289 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 SLC17A9Q9BYT1 436 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 ARRDC1-AS1Q9H2J1 176 aa19.18■□□□□ 0.66
SQSTM1-216ENST00000626660 RIF1Q5UIP0 2472 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 LOC285095A0A1B0GVY8 99 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 A8MX80 341 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 E7EVH7 732 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 CCDC188H7C350 402 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 SLC31A1O15431 190 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 LZTS3O60299 673 aaPredicted RBP19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 TM7SF2O76062 418 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 METTL18O95568 372 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 GAS8O95995 478 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 ETS1P14921 441 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 HLA-DPA1P20036 260 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 MAOBP27338 520 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 AKT2P31751 481 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 HNF1BP35680 557 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 MPLP40238 635 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 LMAN1P49257 510 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 LIG3P49916 1009 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 FAXCQ5TGI0 409 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 ASB12Q8WXK4 309 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 SERAC1Q96JX3 654 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 RUNDC3BQ96NL0 473 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 SRPK1Q96SB4 655 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 HINFPQ9BQA5 517 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 GORASP1Q9BQQ3 440 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 C1QTNF2Q9BXJ5 285 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 LRRC40Q9H9A6 602 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 RAB6BQ9NRW1 208 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 PILRBQ9UKJ0 227 aa19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 ATXN2Q99700 1313 aaKnown RBP19.17■□□□□ 0.66
SQSTM1-216ENST00000626660 EP300Q09472 2414 aaPredicted RBP19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 PLXNA2O75051 1894 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 NPIPB15A6NHN6 443 aaPredicted RBP19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 ERI2A8K979 691 aaKnown RBP19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 PRR5-ARHGAP8B1AHC4 643 aa19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 URI1O94763 535 aaPredicted RBP19.16■□□□□ 0.66
SQSTM1-216ENST00000626660 HEXIM1O94992 359 aaKnown RBP19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms