RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 KIAA1024LP59773 190 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 SRP54P61011 504 aaKnown RBP11.99□□□□□ -0.49
UPF3B-204ENST00000619445 OGDHQ02218 1023 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 PEX6Q13608 980 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 INPP5AQ14642 412 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 BOLA3Q53S33 107 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 PPP6R3Q5H9R7 873 aaPredicted RBP11.99□□□□□ -0.49
UPF3B-204ENST00000619445 C3orf38Q5JPI3 329 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 ENPP7Q6UWV6 458 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 CAMK1DQ8IU85 385 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 LRRC49Q8IUZ0 686 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 TSEN2Q8NCE0 465 aaKnown RBP11.99□□□□□ -0.49
UPF3B-204ENST00000619445 NSMCE1Q8WV22 266 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 TMEM159Q96B96 161 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 IQCDQ96DY2 449 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 LIN37Q96GY3 246 aaPredicted RBP11.99□□□□□ -0.49
UPF3B-204ENST00000619445 CELF6Q96J87 481 aaKnown RBP11.99□□□□□ -0.49
UPF3B-204ENST00000619445 BBC3Q96PG8 261 aaPredicted RBP11.99□□□□□ -0.49
UPF3B-204ENST00000619445 PSKH2Q96QS6 385 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 CCDC3Q9BQI4 270 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 SNRNP25Q9BV90 132 aaKnown RBP11.99□□□□□ -0.49
UPF3B-204ENST00000619445 SLC39A8Q9C0K1 460 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 HSD3B7Q9H2F3 369 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 HAUS2Q9NVX0 235 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 CNOT8Q9UFF9 292 aaKnown RBP11.99□□□□□ -0.49
UPF3B-204ENST00000619445 GPR34Q9UPC5 381 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 SATB2Q9UPW6 733 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 ENTPD2Q9Y5L3 495 aa11.99□□□□□ -0.49
UPF3B-204ENST00000619445 BZW2Q9Y6E2 419 aaKnown RBP11.99□□□□□ -0.49
UPF3B-204ENST00000619445 LRP4O75096 1905 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 LRRC53A6NM62 1247 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 TMCO5BA8MYB1 307 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 DFFAO00273 331 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 ITGA2BP08514 1039 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 MYF5P13349 255 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 PNLIPP16233 465 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 MIPP30301 263 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 SERPINB6P35237 376 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 CXADRP78310 365 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 KLHL30Q0D2K2 578 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 C1orf61Q13536 156 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 ZNF235Q14590 738 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 ALG11Q2TAA5 492 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 DPPA4Q7L190 304 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 CLEC14AQ86T13 490 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 OR56A4Q8NGH8 313 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 PCDH19Q8TAB3 1148 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 SNRNP27Q8WVK2 155 aaKnown RBP11.98□□□□□ -0.49
UPF3B-204ENST00000619445 ATXN7L3BQ96GX2 97 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 CRELD1Q96HD1 420 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 TMEM74Q96NL1 305 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 GFM1Q96RP9 751 aaKnown RBP11.98□□□□□ -0.49
UPF3B-204ENST00000619445 RBM15Q96T37 977 aaKnown RBP eCLIP11.98□□□□□ -0.494e-6■□□□□ 8.6
UPF3B-204ENST00000619445 CLPBQ9H078 707 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 TCEAL2Q9H3H9 227 aaPredicted RBP11.98□□□□□ -0.49
UPF3B-204ENST00000619445 HAUS4Q9H6D7 363 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 TAS2R14Q9NYV8 317 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 GULP1Q9UBP9 304 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 PCSK1NQ9UHG2 260 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 RAI2Q9Y5P3 530 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 CFAP46Q8IYW2 2715 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 KIF26BQ2KJY2 2108 aa11.98□□□□□ -0.49
UPF3B-204ENST00000619445 MGAQ8IWI9 3026 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 NTN3O00634 580 aaPredicted RBP11.97□□□□□ -0.49
UPF3B-204ENST00000619445 KLK10O43240 276 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 BUB1BO60566 1050 aaPredicted RBP11.97□□□□□ -0.49
UPF3B-204ENST00000619445 LRCH4O75427 683 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 RECQL5O94762 991 aaPredicted RBP11.97□□□□□ -0.49
UPF3B-204ENST00000619445 TRIM23P36406 574 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 SCNN1BP51168 640 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 TPM4P67936 248 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 PIGHQ14442 188 aaPredicted RBP11.97□□□□□ -0.49
UPF3B-204ENST00000619445 LBRQ14739 615 aaKnown RBP11.97□□□□□ -0.49
UPF3B-204ENST00000619445 DPYSL2Q16555 572 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 ANO6Q4KMQ2 910 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 FIGNQ5HY92 759 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 PERM1Q5SV97 790 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 TMCO3Q6UWJ1 677 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 LIPIQ6XZB0 460 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 ARHGAP12Q8IWW6 846 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 NDUFAF2Q8N183 169 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 KIAA1524Q8TCG1 905 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 TSACCQ96A04 125 aaPredicted RBP11.97□□□□□ -0.49
UPF3B-204ENST00000619445 ZNF653Q96CK0 615 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 KCTD15Q96SI1 283 aaPredicted RBP11.97□□□□□ -0.49
UPF3B-204ENST00000619445 WDR26Q9H7D7 661 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 GPATCH2LQ9NWQ4 482 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 APPL1Q9UKG1 709 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 COQ6Q9Y2Z9 468 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 PCDHGA7Q9Y5G6 932 aa11.97□□□□□ -0.49
UPF3B-204ENST00000619445 COL27A1Q8IZC6 1860 aaPredicted RBP11.97□□□□□ -0.49
UPF3B-204ENST00000619445 ARHGEF17Q96PE2 2063 aaPredicted RBP11.97□□□□□ -0.49
UPF3B-204ENST00000619445 ZNF462Q96JM2 2506 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 CDRT15L2A8MXV6 281 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 D6RAR5 112 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 PSMD11O00231 422 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 TEX33O43247 280 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 PCCBP05166 539 aa11.96□□□□□ -0.49
UPF3B-204ENST00000619445 CYP2A6P11509 494 aaPredicted RBP11.96□□□□□ -0.49
UPF3B-204ENST00000619445 GLB1P16278 677 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms