RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 FZD4Q9ULV1 537 aa14.42□□□□□ -0.1
UPF1-211ENST00000600868 NCKAP1Q9Y2A7 1128 aa14.42□□□□□ -0.1
UPF1-211ENST00000600868 V9GYY5 206 aaPredicted RBP14.42□□□□□ -0.1
UPF1-211ENST00000600868 A0A0C4DFX4 3053 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 A0A1W2PP55 124 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 CAPN8A6NHC0 703 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 K7ESF4 209 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 PLK4O00444 970 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 AREL1O15033 823 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 AP1G1O43747 822 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 RNASEH2AO75792 299 aaKnown RBP14.41□□□□□ -0.1
UPF1-211ENST00000600868 IGLV3-19P01714 112 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 CYP2A6P11509 494 aaPredicted RBP14.41□□□□□ -0.1
UPF1-211ENST00000600868 CTPS1P17812 591 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 ECHS1P30084 290 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 HNF1BP35680 557 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 TPMTP51580 245 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 ARL4CP56559 192 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 ELP6Q0PNE2 266 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 HLTFQ14527 1009 aaKnown RBP eCLIP14.41□□□□□ -0.1
UPF1-211ENST00000600868 HIF1AQ16665 826 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 DNAJC21Q5F1R6 531 aaKnown RBP14.41□□□□□ -0.1
UPF1-211ENST00000600868 AGBL4Q5VU57 503 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.41□□□□□ -0.1
UPF1-211ENST00000600868 PDIK1LQ8N165 341 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 PGBD3Q8N328 593 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 TMEM105Q8N8V8 129 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 PHACTR1Q9C0D0 580 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 IL22Q9GZX6 179 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 TRABDQ9H4I3 376 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 PRMT8Q9NR22 394 aaPredicted RBP14.41□□□□□ -0.1
UPF1-211ENST00000600868 USP36Q9P275 1121 aaKnown RBP14.41□□□□□ -0.1
UPF1-211ENST00000600868 MTRF1LQ9UGC7 380 aaKnown RBP14.41□□□□□ -0.1
UPF1-211ENST00000600868 SERGEFQ9UGK8 458 aa14.41□□□□□ -0.1
UPF1-211ENST00000600868 SDR42E2A6NKP2 422 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 EIF3HO15372 352 aaKnown RBP eCLIP14.4□□□□□ -0.1
UPF1-211ENST00000600868 ZNF217O75362 1048 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 AVILO75366 819 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 PRKCGP05129 697 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 TUBBP07437 444 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 TPH1P17752 444 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 MCM3P25205 808 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 MMP12P39900 470 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 ABL2P42684 1182 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 SESN2P58004 480 aaPredicted RBP14.4□□□□□ -0.1
UPF1-211ENST00000600868 TAS2R38P59533 333 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 CDKN3Q16667 212 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 FNBP1LQ5T0N5 605 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 CERCAMQ5T4B2 595 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 ERAP2Q6P179 960 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 WDR93Q6P2C0 686 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 DPPA4Q7L190 304 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 C1orf210Q8IVY1 113 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 DTWD2Q8NBA8 298 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 BRSK1Q8TDC3 778 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 GANCQ8TET4 914 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.4□□□□□ -0.1
UPF1-211ENST00000600868 RANBP9Q96S59 729 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 TSPYL1Q9H0U9 437 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 NEUROG2Q9H2A3 272 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 PIH1D1Q9NWS0 290 aaKnown RBP14.4□□□□□ -0.1
UPF1-211ENST00000600868 B4GALT6Q9UBX8 382 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 SPO11Q9Y5K1 396 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 FADS3Q9Y5Q0 445 aa14.4□□□□□ -0.1
UPF1-211ENST00000600868 CCDC163A0A0D9SF12 145 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 NPIPB15A6NHN6 443 aaPredicted RBP14.39□□□□□ -0.11
UPF1-211ENST00000600868 E7ESA3 106 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 SPINT1O43278 529 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 LAMTOR5O43504 91 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 TSPAN6O43657 245 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 PLRG1O43660 514 aaKnown RBP14.39□□□□□ -0.11
UPF1-211ENST00000600868 ALPIP09923 528 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 PIRTP0C851 137 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 ZNF30P17039 623 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 ADRA1DP25100 572 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 MGAT1P26572 445 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 OXTRP30559 389 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 VIPR1P32241 457 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 FAM193AP78312 1265 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 LAMB3Q13751 1172 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 TMEM52BQ4KMG9 183 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 LRRC73Q5JTD7 316 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 CRTC1Q6UUV9 634 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 CCNI2Q6ZMN8 369 aaPredicted RBP14.39□□□□□ -0.11
UPF1-211ENST00000600868 CEP128Q6ZU80 1094 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 CENPUQ71F23 418 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 MYRIPQ8NFW9 859 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 BLOC1S5Q8TDH9 187 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 PTCD2Q8WV60 388 aaKnown RBP14.39□□□□□ -0.11
UPF1-211ENST00000600868 LRRC39Q96DD0 335 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 SIGLEC10Q96LC7 697 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 PWWP2AQ96N64 755 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 SMIM14Q96QK8 99 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 FMO2Q99518 471 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 KDM4CQ9H3R0 1056 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 SGK2Q9HBY8 427 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 NFU1Q9UMS0 254 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 ZNF711Q9Y462 761 aa14.39□□□□□ -0.11
UPF1-211ENST00000600868 C1orf232A0A0U1RR37 186 aa14.38□□□□□ -0.11
UPF1-211ENST00000600868 MAGEB16A2A368 324 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms