RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	GPS1	Q13098	491 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	SOWAHC	Q53LP3	525 aa	Predicted RBP	12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	FSCB	Q5H9T9	825 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	RNF219	Q5W0B1	726 aa	Predicted RBP	12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	WDR93	Q6P2C0	686 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	DHRS13	Q6UX07	377 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	TMPRSS12	Q86WS5	348 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	ZNF354C	Q86Y25	554 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	MARCH9	Q86YJ5	346 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	MMAA	Q8IVH4	418 aa	Known RBP	12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	CCDC13	Q8IYE1	715 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	OR7D4	Q8NG98	312 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	CCDC110	Q8TBZ0	833 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	RTP4	Q96DX8	246 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	AASDHPPT	Q9NRN7	309 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	GRHL1	Q9NZI5	618 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	NBEA	Q8NFP9	2946 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	ARID1B	Q8NFD5	2236 aa	Predicted RBP	12.82	□□□□□ -0.36
UPF1-208	ENST00000600012	ANKRD36	A6QL64	1941 aa		12.82	□□□□□ -0.36
UPF1-208	ENST00000600012		A0A087WV48	116 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	ARHGAP42	A6NI28	874 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	TTC34	A8MYJ7	566 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	C10orf142	B7Z368	130 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012		F5H423	210 aa	Predicted RBP	12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	MAFK	O60675	156 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	ADH1B	P00325	375 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	WNT1	P04628	370 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	CDK4	P11802	303 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	C5AR1	P21730	350 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	IVD	P26440	423 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	CD38	P28907	300 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	TNFRSF8	P28908	595 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	STIP1	P31948	543 aa	Known RBP	12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	ADCY8	P40145	1251 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	NNMT	P40261	264 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	CTSO	P43234	321 aa	Predicted RBP	12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	PSMD8	P48556	350 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	CLCN6	P51797	869 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	GNA12	Q03113	381 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	WASHC5	Q12768	1159 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	ZBTB17	Q13105	803 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	ZNF177	Q13360	481 aa	Predicted RBP	12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	HLTF	Q14527	1009 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	POLD3	Q15054	466 aa	Predicted RBP	12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	P3H1	Q32P28	736 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	FAXC	Q5TGI0	409 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	IZUMO3	Q5VZ72	239 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	CXorf57	Q6NSI4	855 aa	Known RBP	12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	GATAD2A	Q86YP4	633 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	SEC14L1	Q92503	715 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	SNF8	Q96H20	258 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	BRD8	Q9H0E9	1235 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	EBF2	Q9HAK2	575 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	SP110	Q9HB58	689 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	FAM114A2	Q9NRY5	505 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	DONSON	Q9NYP3	566 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	IPO11	Q9UI26	975 aa	Known RBP	12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	NFU1	Q9UMS0	254 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	MYLK	Q15746	1914 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	LAMA5	O15230	3695 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012	IGSF10	Q6WRI0	2623 aa		12.81	□□□□□ -0.36
UPF1-208	ENST00000600012		A0A0D9SEW6	157 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012		A0A1W2PR77	199 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	C5orf60	A6NFR6	353 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012		J3KR12	359 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	DNALI1	O14645	258 aa	Predicted RBP	12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	LDOC1	O95751	146 aa	Predicted RBP	12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	C1S	P09871	688 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	CCNC	P24863	283 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	PTPN3	P26045	913 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	ECHS1	P30084	290 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	HNF1B	P35680	557 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	ARRB1	P49407	418 aa	Predicted RBP	12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	ADPRH	P54922	357 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	YBEY	P58557	167 aa	Predicted RBP	12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	SLC12A1	Q13621	1099 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	ELAVL3	Q14576	367 aa	Known RBP	12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	PARP15	Q460N3	678 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	PRAMEF14	Q5SWL7	426 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	C6orf118	Q5T5N4	469 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	ZDHHC24	Q6UX98	284 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	LEKR1	Q6ZMV7	388 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	ZNF567	Q8N184	647 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	STK40	Q8N2I9	435 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	OXR1	Q8N573	874 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	AADAT	Q8N5Z0	425 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	OR14C36	Q8NHC7	312 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	CCHCR1	Q8TD31	782 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	SAP25	Q8TEE9	199 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	PTPRN2	Q92932	1015 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	ARHGEF2	Q92974	986 aa	Known RBP	12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	NXPE2	Q96DL1	559 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	LRIG1	Q96JA1	1093 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	SERAC1	Q96JX3	654 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	CNDP2	Q96KP4	475 aa	Known RBP	12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	SPATA13	Q96N96	652 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	TSGA13	Q96PP4	275 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	FAM129B	Q96TA1	746 aa		12.8	□□□□□ -0.36
UPF1-208	ENST00000600012	MAGEH1	Q9H213	219 aa		12.8	□□□□□ -0.36

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