RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 WSCD2Q2TBF2 565 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 ESRP1Q6NXG1 681 aaKnown RBP18.86■□□□□ 0.61
PNKP-213ENST00000599543 CRTC1Q6UUV9 634 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 RBM44Q6ZP01 1051 aaKnown RBP18.86■□□□□ 0.61
PNKP-213ENST00000599543 SRLQ86TD4 932 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 PSTKQ8IV42 348 aaKnown RBP18.86■□□□□ 0.61
PNKP-213ENST00000599543 SLC35F3Q8IY50 421 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 FSTL5Q8N475 847 aaPredicted RBP18.86■□□□□ 0.61
PNKP-213ENST00000599543 NPWQ8N729 165 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 TSEN2Q8NCE0 465 aaKnown RBP18.86■□□□□ 0.61
PNKP-213ENST00000599543 ZNF248Q8NDW4 579 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 NAT6Q93015 286 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 TRIM11Q96F44 468 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 BTBD6Q96KE9 485 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 FCRL3Q96P31 734 aaPredicted RBP18.86■□□□□ 0.61
PNKP-213ENST00000599543 BBC3Q96PG8 261 aaPredicted RBP18.86■□□□□ 0.61
PNKP-213ENST00000599543 LGMNQ99538 433 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 POLR1BQ9H9Y6 1135 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 NENFQ9UMX5 172 aa18.86■□□□□ 0.61
PNKP-213ENST00000599543 MGAQ8IWI9 3026 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 YY2O15391 372 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 LRCH4O75427 683 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 PRKCGP05129 697 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 PCCBP05166 539 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 ALPIP09923 528 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 MYBL1P10243 752 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 CTSEP14091 401 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 RGRP47804 291 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 LSSP48449 732 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 BCL2L1Q07817 233 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 INPP5AQ14642 412 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 RFTN1Q14699 578 aaPredicted RBP18.85■□□□□ 0.61
PNKP-213ENST00000599543 NFATC4Q14934 902 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 ELOCQ15369 112 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 AFMIDQ63HM1 303 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 ENPP7Q6UWV6 458 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 CYP4V2Q6ZWL3 525 aaPredicted RBP18.85■□□□□ 0.61
PNKP-213ENST00000599543 ZSWIM9Q86XI8 627 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 HID1Q8IV36 788 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 ARHGAP12Q8IWW6 846 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 ATL2Q8NHH9 583 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 SCG3Q8WXD2 468 aaKnown RBP18.85■□□□□ 0.61
PNKP-213ENST00000599543 UBL7Q96S82 380 aaPredicted RBP18.85■□□□□ 0.61
PNKP-213ENST00000599543 CLPBQ9H078 707 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 PRORYQ9H606 182 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 ZWILCHQ9H900 591 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 MRPL47Q9HD33 250 aaKnown RBP18.85■□□□□ 0.61
PNKP-213ENST00000599543 OR1A2Q9Y585 309 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 KALRNO60229 2985 aa18.85■□□□□ 0.61
PNKP-213ENST00000599543 TCEA3O75764 348 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 DXOO77932 396 aaKnown RBP18.84■□□□□ 0.61
PNKP-213ENST00000599543 RASGRP1O95267 797 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 ERVPABLB-1P60509 514 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 POLR2LP62875 67 aaKnown RBP18.84■□□□□ 0.61
PNKP-213ENST00000599543 IL10RBQ08334 325 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 MTM1Q13496 603 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 AGERQ15109 404 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 TCEA2Q15560 299 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 SLC18A3Q16572 532 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 C3orf38Q5JPI3 329 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 PERM1Q5SV97 790 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 ARHGAP36Q6ZRI8 547 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 RD3Q7Z3Z2 195 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 SPACA3Q8IXA5 215 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 PCDH19Q8TAB3 1148 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 WDR48Q8TAF3 677 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 TSACCQ96A04 125 aaPredicted RBP18.84■□□□□ 0.61
PNKP-213ENST00000599543 GRAMD1AQ96CP6 724 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 CCDC42Q96M95 316 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 APOOQ9BUR5 198 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 CWC15Q9P013 229 aaKnown RBP18.84■□□□□ 0.61
PNKP-213ENST00000599543 KLQ9UEF7 1012 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 SATB2Q9UPW6 733 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 RAI2Q9Y5P3 530 aa18.84■□□□□ 0.61
PNKP-213ENST00000599543 GCN1Q92616 2671 aaKnown RBP18.83■□□□□ 0.61
PNKP-213ENST00000599543 SSU72P8A0A1W2PR75 194 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 CELA2BP08218 269 aaPredicted RBP18.83■□□□□ 0.6
PNKP-213ENST00000599543 ELFN1P0C7U0 828 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 HCAR3P49019 387 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 SCNN1BP51168 640 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 RENBPP51606 427 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 TLE3Q04726 772 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 NSUN2Q08J23 767 aaKnown RBP eCLIP18.83■□□□□ 0.6
PNKP-213ENST00000599543 DPYSQ14117 519 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 ALG11Q2TAA5 492 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 TMCO4Q5TGY1 634 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 CPNE8Q86YQ8 564 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 LZTR1Q8N653 840 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 ARL10Q8N8L6 244 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 ECHDC3Q96DC8 303 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 ATXN7L3BQ96GX2 97 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 NAF1Q96HR8 494 aaKnown RBP18.83■□□□□ 0.6
PNKP-213ENST00000599543 CCDC3Q9BQI4 270 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 NUP85Q9BW27 656 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 SYNDIG1Q9H7V2 258 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 THSD1Q9NS62 852 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 SIRPGQ9P1W8 387 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 GULP1Q9UBP9 304 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 SEPT3Q9UH03 358 aa18.83■□□□□ 0.6
PNKP-213ENST00000599543 PADI4Q9UM07 663 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms