RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SEPT3Q9UH03 358 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 APPL1Q9UKG1 709 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 PNMA8BQ9ULN7 279 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-211ENST00000597968 PCDHGA7Q9Y5G6 932 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 SMTNL1A8MU46 457 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 INSIG1O15503 277 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 ZW10O43264 779 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 SOCS5O75159 536 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 GLB1P16278 677 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 ERCC2P18074 760 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 CCKBRP32239 447 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 OGDHQ02218 1023 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 VAC14Q08AM6 782 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 C1orf61Q13536 156 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 CLPPQ16740 277 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-211ENST00000597968 BOLA3Q53S33 107 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 LRRC73Q5JTD7 316 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 PERM1Q5SV97 790 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 OGFOD3Q6PK18 319 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 DPPA4Q7L190 304 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 CAMK1DQ8IU85 385 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 HID1Q8IV36 788 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 BBS5Q8N3I7 341 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 TSEN2Q8NCE0 465 aaKnown RBP13.69□□□□□ -0.22
TRIM28-211ENST00000597968 GPR156Q8NFN8 814 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 OR56A4Q8NGH8 313 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 PRR11Q96HE9 360 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-211ENST00000597968 EXOC2Q96KP1 924 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 SNRNP25Q9BV90 132 aaKnown RBP13.69□□□□□ -0.22
TRIM28-211ENST00000597968 B3GNT4Q9C0J1 378 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 DHX35Q9H5Z1 703 aaKnown RBP13.69□□□□□ -0.22
TRIM28-211ENST00000597968 SP110Q9HB58 689 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 RTN4Q9NQC3 1192 aaKnown RBP13.69□□□□□ -0.22
TRIM28-211ENST00000597968 TMEM63CQ9P1W3 806 aa13.69□□□□□ -0.22
TRIM28-211ENST00000597968 PTPRQQ9UMZ3 2332 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 TRAFD1O14545 582 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-211ENST00000597968 PLD2O14939 933 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 KLK10O43240 276 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 BUB1BO60566 1050 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-211ENST00000597968 RECQL5O94762 991 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-211ENST00000597968 ELFN1P0C7U0 828 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 ITIH2P19823 946 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 TYRO3Q06418 890 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 DPYSL2Q16555 572 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 FIGNQ5HY92 759 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 XKR5Q6UX68 686 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 LIPIQ6XZB0 460 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 LRRC49Q8IUZ0 686 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 ARHGAP12Q8IWW6 846 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 AOPEPQ8N6M6 819 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 PCDH19Q8TAB3 1148 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 GFM1Q96RP9 751 aaKnown RBP13.68□□□□□ -0.22
TRIM28-211ENST00000597968 GPR34Q9UPC5 381 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 ATMQ13315 3056 aa13.68□□□□□ -0.22
TRIM28-211ENST00000597968 TDRD6O60522 2096 aaKnown RBP13.68□□□□□ -0.22
TRIM28-211ENST00000597968 LRRC53A6NM62 1247 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 D6RAR5 112 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 K7ENP7 123 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 PSMD11O00231 422 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 TEX33O43247 280 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 HTRA2O43464 458 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-211ENST00000597968 NUDT21O43809 227 aaKnown RBP13.67□□□□□ -0.22
TRIM28-211ENST00000597968 LRCH4O75427 683 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 TEAD1P28347 426 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 MIPP30301 263 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 SERPINB6P35237 376 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 ARL4AP40617 200 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 PDX1P52945 283 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 CFHR1Q03591 330 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 RALGDSQ12967 914 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 DPYSQ14117 519 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 ASIC2Q16515 512 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 INO80CQ6PI98 192 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-211ENST00000597968 RAVER1Q8IY67 606 aaKnown RBP13.67□□□□□ -0.22
TRIM28-211ENST00000597968 ARFGAP1Q8N6T3 406 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 KIAA1524Q8TCG1 905 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 TSACCQ96A04 125 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-211ENST00000597968 CELF6Q96J87 481 aaKnown RBP13.67□□□□□ -0.22
TRIM28-211ENST00000597968 ISCUQ9H1K1 167 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 HAUS4Q9H6D7 363 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 WDR26Q9H7D7 661 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 CAAP1Q9H8G2 361 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 TAS2R14Q9NYV8 317 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 GULP1Q9UBP9 304 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 CNOT8Q9UFF9 292 aaKnown RBP13.67□□□□□ -0.22
TRIM28-211ENST00000597968 COQ6Q9Y2Z9 468 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 OR1A2Q9Y585 309 aa13.67□□□□□ -0.22
TRIM28-211ENST00000597968 BZW2Q9Y6E2 419 aaKnown RBP13.67□□□□□ -0.22
TRIM28-211ENST00000597968 MGAQ8IWI9 3026 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 COL27A1Q8IZC6 1860 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-211ENST00000597968 ASXL3Q9C0F0 2248 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 A0A1W2PNU3 283 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-211ENST00000597968 H3BRJ5 948 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 C1QL1O75973 258 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 TNFSF15O95150 251 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 FTLP02792 175 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-211ENST00000597968 PCCBP05166 539 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 KRT10P13645 584 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 RGRP47804 291 aa13.66□□□□□ -0.22
TRIM28-211ENST00000597968 SCNN1BP51168 640 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms