RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 RBL1P28749 1068 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 PTPN7P35236 360 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 NUDT1P36639 197 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 GRIA4P48058 902 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 LIG3P49916 1009 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 BNC1Q01954 994 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 FGL2Q14314 439 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 PRKD1Q15139 912 aaPredicted RBP11.15□□□□□ -0.62
LIG1-211ENST00000596457 NOMO1Q15155 1222 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 PTPRRQ15256 657 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 PCSK7Q16549 785 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 KIF19Q2TAC6 998 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 HLA-BQ31612 363 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 TMEM259Q4ZIN3 620 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 TEX44Q53QW1 395 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 RALGPS1Q5JS13 557 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 ZNF662Q6ZS27 426 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 PID1Q7Z2X4 250 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 PTAR1Q7Z6K3 402 aaPredicted RBP11.15□□□□□ -0.62
LIG1-211ENST00000596457 NDUFAF2Q8N183 169 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 CNTD1Q8N815 330 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 ARRDC2Q8TBH0 407 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 HTR3CQ8WXA8 447 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 ECHDC3Q96DC8 303 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 KLHDC7BQ96G42 594 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 PDLIM2Q96JY6 352 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 IL21RQ9HBE5 538 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 GLOD4Q9HC38 313 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 UBP1Q9NZI7 540 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 KLHL8Q9P2G9 620 aaPredicted RBP11.15□□□□□ -0.62
LIG1-211ENST00000596457 AMACRQ9UHK6 382 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 PHTF1Q9UMS5 762 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 EFR3BQ9Y2G0 817 aa11.15□□□□□ -0.62
LIG1-211ENST00000596457 A0A0U1RQS6 177 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 A0A1W2PQ67 120 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 A0A1W2PR77 199 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 TCRBV7S2A1N4TA0A589 114 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 HACD1B0YJ81 288 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 TLR4O00206 839 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 FPGTO14772 594 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 VILLO15195 856 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 RAD51BO15315 384 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 ZSCAN12O43309 604 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 HTRA2O43464 458 aaPredicted RBP11.14□□□□□ -0.63
LIG1-211ENST00000596457 PGLSO95336 258 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 ADRB1P08588 477 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 ALPIP09923 528 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 ELFN1P0C7U0 828 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 THEGLP0DJG4 465 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 RBP3P10745 1247 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 CYP2A6P11509 494 aaPredicted RBP11.14□□□□□ -0.63
LIG1-211ENST00000596457 C6P13671 934 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 CA4P22748 312 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 NFKBIAP25963 317 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 MMP12P39900 470 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 SUOXP51687 545 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 SKOR1P84550 965 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 IL9RQ01113 521 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 XRCC4Q13426 336 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 IHHQ14623 411 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 ACOX1Q15067 660 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 PPM1JQ5JR12 505 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 CDKL3Q8IVW4 592 aaPredicted RBP11.14□□□□□ -0.63
LIG1-211ENST00000596457 REXO1L1PQ8IX06 675 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 LPCAT1Q8NF37 534 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 TRIM58Q8NG06 486 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 SPATA22Q8NHS9 363 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 QKIQ96PU8 341 aaKnown RBP eCLIP11.14□□□□□ -0.63
LIG1-211ENST00000596457 SMIM14Q96QK8 99 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 FERMT1Q9BQL6 677 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 C1QTNF2Q9BXJ5 285 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 PCDH9Q9HC56 1237 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 B4GALT6Q9UBX8 382 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 MAST4O15021 2626 aa11.14□□□□□ -0.63
LIG1-211ENST00000596457 C10orf142B7Z368 130 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 ENC1O14682 589 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 KCNN4O15554 427 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 MTSS1O43312 755 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 PMPCBO75439 489 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 CER1O95813 267 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 MT-CYBP00156 380 aaPredicted RBP11.13□□□□□ -0.63
LIG1-211ENST00000596457 PCCBP05166 539 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 MMP2P08253 660 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 NFKB1P19838 968 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 VIPR1P32241 457 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 CXCR5P32302 372 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 HNF1BP35680 557 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 WASHC5Q12768 1159 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 ARHGEF7Q14155 803 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 GALNT3Q14435 633 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 ZNF569Q5MCW4 686 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 ALG1LQ6GMV1 187 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 IL27RAQ6UWB1 636 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 LIPIQ6XZB0 460 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 KDM7AQ6ZMT4 941 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 GCNT7Q6ZNI0 430 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 Q6ZSR6 202 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 DPPA4Q7L190 304 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 ZNF567Q8N184 647 aa11.13□□□□□ -0.63
LIG1-211ENST00000596457 MFSD2AQ8NA29 543 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms