RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PPP6R3Q5H9R7 873 aaPredicted RBP12.6□□□□□ -0.39
UPF1-203ENST00000594504 ARHGAP40Q5TG30 622 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 RAD9BQ6WBX8 426 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 RFX8Q6ZV50 586 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 RD3Q7Z3Z2 195 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 TMEM139Q8IV31 216 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 SLC35F3Q8IY50 421 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 DENND6BQ8NEG7 585 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 BTN2A2Q8WVV5 523 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 HSPH1Q92598 858 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 TSACCQ96A04 125 aaPredicted RBP12.6□□□□□ -0.39
UPF1-203ENST00000594504 PRR11Q96HE9 360 aaPredicted RBP12.6□□□□□ -0.39
UPF1-203ENST00000594504 HIC2Q96JB3 615 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 GDAP1L1Q96MZ0 367 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 LRRC61Q9BV99 259 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 BOCQ9BWV1 1114 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 ZWILCHQ9H900 591 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 GRPEL1Q9HAV7 217 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 ASCL3Q9NQ33 180 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.6□□□□□ -0.39
UPF1-203ENST00000594504 LHX3Q9UBR4 397 aa12.6□□□□□ -0.39
UPF1-203ENST00000594504 A0A0A6YYK5 440 aaPredicted RBP12.59□□□□□ -0.39
UPF1-203ENST00000594504 H3BRJ5 948 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 J3KR12 359 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 TPP1O14773 563 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 KLK10O43240 276 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 DAPK3O43293 454 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 BUB1BO60566 1050 aaPredicted RBP12.59□□□□□ -0.39
UPF1-203ENST00000594504 ANXA6P08133 673 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 ARL4AP40617 200 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 HADHBP55084 474 aaKnown RBP12.59□□□□□ -0.39
UPF1-203ENST00000594504 YBEYP58557 167 aaPredicted RBP12.59□□□□□ -0.39
UPF1-203ENST00000594504 PPARDQ03181 441 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 RAD51Q06609 339 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 SERINC3Q13530 473 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 MESDQ14696 234 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 WSCD2Q2TBF2 565 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 TMEM52BQ4KMG9 183 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 INO80DQ53TQ3 878 aaPredicted RBP12.59□□□□□ -0.39
UPF1-203ENST00000594504 TXNRD3NBQ6F5E7 133 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 ZSCAN30Q86W11 494 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 LSMEM2Q8N112 164 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 UMODL1-AS1Q8N2C9 162 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 CELF6Q96J87 481 aaKnown RBP12.59□□□□□ -0.39
UPF1-203ENST00000594504 EVA1BQ9NVM1 165 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 SIRPGQ9P1W8 387 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 GULP1Q9UBP9 304 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 PADI4Q9UM07 663 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 MFHAS1Q9Y4C4 1052 aa12.59□□□□□ -0.39
UPF1-203ENST00000594504 KIF26BQ2KJY2 2108 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 TEX51A0A1B0GUA7 166 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 ZSCAN5CA6NGD5 496 aaPredicted RBP12.58□□□□□ -0.4
UPF1-203ENST00000594504 TMEM110-MUSTN1A8MSY1 372 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 DXOO77932 396 aaKnown RBP12.58□□□□□ -0.4
UPF1-203ENST00000594504 KRT7P08729 469 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 XPAP23025 273 aaPredicted RBP12.58□□□□□ -0.4
UPF1-203ENST00000594504 SLC1A1P43005 524 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 RGRP47804 291 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 YPEL5P62699 121 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 DPYSQ14117 519 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 PARP15Q460N3 678 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 C6orf132Q5T0Z8 1188 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 KCTD16Q68DU8 428 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 ENPP7Q6UWV6 458 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 POLNQ7Z5Q5 900 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 ZSWIM9Q86XI8 627 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 CPNE8Q86YQ8 564 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 CAMK1DQ8IU85 385 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 HID1Q8IV36 788 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 KCNE4Q8WWG9 221 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 SLC46A1Q96NT5 459 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 CCDC3Q9BQI4 270 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 CPEB1Q9BZB8 566 aaKnown RBP12.58□□□□□ -0.4
UPF1-203ENST00000594504 SLC13A1Q9BZW2 595 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 SLC39A8Q9C0K1 460 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 SUV39H2Q9H5I1 410 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 SYNDIG1Q9H7V2 258 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 PCDH18Q9HCL0 1135 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 CWC15Q9P013 229 aaKnown RBP12.58□□□□□ -0.4
UPF1-203ENST00000594504 RCOR3Q9P2K3 495 aaPredicted RBP12.58□□□□□ -0.4
UPF1-203ENST00000594504 DKK3Q9UBP4 350 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 RABGEF1Q9UJ41 708 aa12.58□□□□□ -0.4
UPF1-203ENST00000594504 RP1P56715 2156 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 ZFYVE26Q68DK2 2539 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 BAHCC1Q9P281 2608 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 LMO7DNF2Z398 122 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 TK2O00142 265 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 AGRPO00253 132 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 C6P13671 934 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 ERCC2P18074 760 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 RBMS1P29558 406 aaKnown RBP12.57□□□□□ -0.4
UPF1-203ENST00000594504 GJC1P36383 396 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 NOP2P46087 812 aaKnown RBP12.57□□□□□ -0.4
UPF1-203ENST00000594504 VAV2P52735 878 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 NDST2P52849 883 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 CDH6P55285 790 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 TAS2R40P59535 323 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 ERVPABLB-1P60509 514 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 KRT81Q14533 505 aa12.57□□□□□ -0.4
UPF1-203ENST00000594504 INPP5AQ14642 412 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms