RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ATP5OP48047 213 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 EPHB1P54762 984 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 CLDN2P57739 230 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 RPL26P61254 145 aaKnown RBP15.1■□□□□ 0.01
UPF1-202ENST00000594243 OTUD4Q01804 1114 aaKnown RBP15.1■□□□□ 0.01
UPF1-202ENST00000594243 NIPAL4Q0D2K0 466 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 AGERQ15109 404 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 RPS6KA1Q15418 735 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 MEI1Q5TIA1 1274 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 AADACL2Q6P093 401 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 LIPIQ6XZB0 460 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 USP45Q70EL2 814 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 ABI3BPQ7Z7G0 1075 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 ACTL9Q8TC94 416 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 PIH1D2Q8WWB5 315 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 CENPTQ96BT3 561 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 PDLIM2Q96JY6 352 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 BMFQ96LC9 184 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 ELF4Q99607 663 aaPredicted RBP15.1■□□□□ 0.01
UPF1-202ENST00000594243 KLF6Q99612 283 aaPredicted RBP15.1■□□□□ 0.01
UPF1-202ENST00000594243 HERPUD2Q9BSE4 406 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 TDRD1Q9BXT4 1180 aaKnown RBP15.1■□□□□ 0.01
UPF1-202ENST00000594243 CEP41Q9BYV8 373 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 SLC25A51Q9H1U9 297 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 PCDH9Q9HC56 1237 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 KCTD5Q9NXV2 234 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 RPL26L1Q9UNX3 145 aaKnown RBP15.1■□□□□ 0.01
UPF1-202ENST00000594243 CA5BQ9Y2D0 317 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 PCDHGB2Q9Y5G2 931 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 PCDH15Q96QU1 1955 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 DNAH14Q0VDD8 3507 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 KCNK3O14649 394 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 TOR1BO14657 336 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 RAD51BO15315 384 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 ZSCAN12O43309 604 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 PDHA1P08559 390 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 VIPR1P32241 457 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 RABIFP47224 123 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 ARRB1P49407 418 aaPredicted RBP15.09■□□□□ 0.01
UPF1-202ENST00000594243 EIF3EP60228 445 aaKnown RBP15.09■□□□□ 0.01
UPF1-202ENST00000594243 SKOR1P84550 965 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 SEMG2Q02383 582 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 RALGDSQ12967 914 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 LRRC14Q15048 493 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 SEL1L2Q5TEA6 688 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 KYAT3Q6YP21 454 aaKnown RBP15.09■□□□□ 0.01
UPF1-202ENST00000594243 GCNT7Q6ZNI0 430 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 Q6ZSR6 202 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 PID1Q7Z2X4 250 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 CDKL3Q8IVW4 592 aaPredicted RBP15.09■□□□□ 0.01
UPF1-202ENST00000594243 IMP4Q96G21 291 aaKnown RBP15.09■□□□□ 0.01
UPF1-202ENST00000594243 QKIQ96PU8 341 aaKnown RBP eCLIP15.09■□□□□ 0.01
UPF1-202ENST00000594243 ADGRE3Q9BY15 652 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 SLC32A1Q9H598 525 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 IL21RQ9HBE5 538 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 GLOD4Q9HC38 313 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 KLHL8Q9P2G9 620 aaPredicted RBP15.09■□□□□ 0.01
UPF1-202ENST00000594243 B4GALT6Q9UBX8 382 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 TRHDEQ9UKU6 1024 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 DNPEPQ9ULA0 475 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 CHKBQ9Y259 395 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 SHROOM3Q8TF72 1996 aa15.09■□□□□ 0.01
UPF1-202ENST00000594243 SDK1Q7Z5N4 2213 aa15.08■□□□□ 0
UPF1-202ENST00000594243 A0A1B0GTQ1 180 aa15.08■□□□□ 0
UPF1-202ENST00000594243 DCDC2BA2VCK2 349 aa15.08■□□□□ 0
UPF1-202ENST00000594243 POM121BA6NF01 834 aa15.08■□□□□ 0
UPF1-202ENST00000594243 A8MX80 341 aa15.08■□□□□ 0
UPF1-202ENST00000594243 H0Y8X5 98 aa15.08■□□□□ 0
UPF1-202ENST00000594243 YKT6O15498 198 aa15.08■□□□□ 0
UPF1-202ENST00000594243 MMP2P08253 660 aa15.08■□□□□ 0
UPF1-202ENST00000594243 RBP3P10745 1247 aa15.08■□□□□ 0
UPF1-202ENST00000594243 CSRP1P21291 193 aaKnown RBP15.08■□□□□ 0
UPF1-202ENST00000594243 RBL1P28749 1068 aa15.08■□□□□ 0
UPF1-202ENST00000594243 CCT8P50990 548 aa15.08■□□□□ 0
UPF1-202ENST00000594243 YPEL5P62699 121 aa15.08■□□□□ 0
UPF1-202ENST00000594243 WASHC5Q12768 1159 aa15.08■□□□□ 0
UPF1-202ENST00000594243 ARHGEF7Q14155 803 aa15.08■□□□□ 0
UPF1-202ENST00000594243 IHHQ14623 411 aa15.08■□□□□ 0
UPF1-202ENST00000594243 SLC14A2Q15849 920 aa15.08■□□□□ 0
UPF1-202ENST00000594243 DARS2Q6PI48 645 aaKnown RBP15.08■□□□□ 0
UPF1-202ENST00000594243 DGLUCYQ7Z3D6 616 aa15.08■□□□□ 0
UPF1-202ENST00000594243 SPATS2Q86XZ4 545 aaKnown RBP15.08■□□□□ 0
UPF1-202ENST00000594243 TP53I13Q8NBR0 393 aaPredicted RBP15.08■□□□□ 0
UPF1-202ENST00000594243 OR13H1Q8NG92 308 aa15.08■□□□□ 0
UPF1-202ENST00000594243 MCCC1Q96RQ3 725 aaPredicted RBP15.08■□□□□ 0
UPF1-202ENST00000594243 RBM15Q96T37 977 aaKnown RBP eCLIP15.08■□□□□ 0
UPF1-202ENST00000594243 COQ6Q9Y2Z9 468 aa15.08■□□□□ 0
UPF1-202ENST00000594243 ADAMTS9Q9P2N4 1935 aa15.07■□□□□ 0
UPF1-202ENST00000594243 A0A0J9YYE9 177 aa15.07■□□□□ 0
UPF1-202ENST00000594243 ANKRD66B4E2M5 251 aa15.07■□□□□ 0
UPF1-202ENST00000594243 PSMD11O00231 422 aa15.07■□□□□ 0
UPF1-202ENST00000594243 RECQL5O94762 991 aaPredicted RBP15.07■□□□□ 0
UPF1-202ENST00000594243 STK10O94804 968 aaKnown RBP15.07■□□□□ 0
UPF1-202ENST00000594243 HEXIM1O94992 359 aaKnown RBP15.07■□□□□ 0
UPF1-202ENST00000594243 PRLP01236 227 aa15.07■□□□□ 0
UPF1-202ENST00000594243 TRBC1P01850 177 aa15.07■□□□□ 0
UPF1-202ENST00000594243 CD59P13987 128 aa15.07■□□□□ 0
UPF1-202ENST00000594243 ZNF30P17039 623 aa15.07■□□□□ 0
UPF1-202ENST00000594243 CTPS1P17812 591 aa15.07■□□□□ 0
UPF1-202ENST00000594243 HNF1BP35680 557 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms