RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 NRXN2Q9P2S2 1712 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 MYH11P35749 1972 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 C2orf71A6NGG8 1288 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 CD3EAPO15446 510 aaKnown RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 RPP40O75818 363 aaKnown RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 PYGBP11216 843 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 PEX5P50542 639 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 RUNX3Q13761 415 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 CERCAMQ5T4B2 595 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 LRRC8BQ6P9F7 803 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 PRR23CQ6ZRP0 262 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 APLFQ8IW19 511 aaPredicted RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 SPATA22Q8NHS9 363 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 STYXQ8WUJ0 223 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 PTCD2Q8WV60 388 aaKnown RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 MRPL38Q96DV4 380 aaKnown RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 FAR2Q96K12 515 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 OSBPL1AQ9BXW6 950 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 FGFR1OP2Q9NVK5 253 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 NCKIPSDQ9NZQ3 722 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 MARCOQ9UEW3 520 aaPredicted RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 STC2O76061 302 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 CCDC159P0C7I6 412 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 SKIV2L2P42285 1042 aaKnown RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 NEK3P51956 506 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 ERVFC1P60507 584 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 CAPRIN1Q14444 709 aaKnown RBP9.88□□□□□ -0.83
LIG3-216ENST00000593099 CRTC3Q6UUV7 619 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 GDPD4Q6W3E5 623 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 CERS6Q6ZMG9 384 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 KIAA2013Q8IYS2 634 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 TMEM130Q8N3G9 435 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 VPS37AQ8NEZ2 397 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 ATL1Q8WXF7 558 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 NCLNQ969V3 563 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 PPP1R36Q96LQ0 422 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 EFHD1Q9BUP0 239 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 SLC2A11Q9BYW1 496 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 CRISPLD2Q9H0B8 497 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 ELOVL6Q9H5J4 265 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 RETREG1Q9H6L5 497 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 ARL15Q9NXU5 204 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 HSFX1Q9UBD0 423 aa9.88□□□□□ -0.83
LIG3-216ENST00000593099 PRMT5O14744 637 aaPredicted RBP9.87□□□□□ -0.83
LIG3-216ENST00000593099 FPGTO14772 594 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 CCNT2O60583 730 aaKnown RBP9.87□□□□□ -0.83
LIG3-216ENST00000593099 ACVRL1P37023 503 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 PIK3CGP48736 1102 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 OGDHQ02218 1023 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 PPIDQ08752 370 aaKnown RBP9.87□□□□□ -0.83
LIG3-216ENST00000593099 DNAJC3Q13217 504 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 PLEKHG6Q3KR16 790 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 KBTBD12Q3ZCT8 623 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 PITRM1Q5JRX3 1037 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 DUPD1Q68J44 220 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 GLMNQ92990 594 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 KLHL29Q96CT2 875 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 NLNQ9BYT8 704 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 MANSC1Q9H8J5 431 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 ELOVL2Q9NXB9 296 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 DKK3Q9UBP4 350 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 TMEM59LQ9UK28 342 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 ARHGAP26Q9UNA1 814 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 SLC27A6Q9Y2P4 619 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 LAMA4Q16363 1823 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 CHUKO15111 745 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 KRT6AP02538 564 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 KRT6BP04259 564 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 MAT2AP31153 395 aaKnown RBP9.87□□□□□ -0.83
LIG3-216ENST00000593099 KRT6CP48668 564 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 HNRNPH2P55795 449 aaKnown RBP9.87□□□□□ -0.83
LIG3-216ENST00000593099 DAB2P98082 770 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 ILF3Q12906 894 aaKnown RBP eCLIP9.87□□□□□ -0.83
LIG3-216ENST00000593099 ARSIQ5FYB1 569 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 ANKS6Q68DC2 871 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 Q6ZVU0 165 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 PHYKPLQ8IUZ5 450 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 PRMT1Q99873 361 aaKnown RBP9.87□□□□□ -0.83
LIG3-216ENST00000593099 NUF2Q9BZD4 464 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 TMEM248Q9NWD8 314 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 IL36AQ9UHA7 158 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 ZFP69BQ9UJL9 534 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 RFXAPO00287 272 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 TM7SF2O76062 418 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 EIF4HQ15056 248 aaKnown RBP9.87□□□□□ -0.83
LIG3-216ENST00000593099 DHCR24Q15392 516 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 CYP2A13Q16696 494 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 TRIM71Q2Q1W2 868 aaKnown RBP9.87□□□□□ -0.83
LIG3-216ENST00000593099 C6orf10Q5SRN2 563 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 ARCQ7LC44 396 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 GPSM1Q86YR5 675 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 ZNF366Q8N895 744 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 SLC43A3Q8NBI5 491 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 LRRC37BQ96QE4 947 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 UNKQ9C0B0 810 aaKnown RBP9.87□□□□□ -0.83
LIG3-216ENST00000593099 COG4Q9H9E3 785 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 CDYLQ9Y232 598 aa9.87□□□□□ -0.83
LIG3-216ENST00000593099 A0A087X1B8 175 aa9.86□□□□□ -0.83
LIG3-216ENST00000593099 TCRBV7S2A1N4TA0A589 114 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms