RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 RPL26P61254 145 aaKnown RBP11.96□□□□□ -0.49
LIG3-213ENST00000590630 NIPAL4Q0D2K0 466 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 AGERQ15109 404 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 SLC14A2Q15849 920 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 TEX44Q53QW1 395 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 KYAT3Q6YP21 454 aaKnown RBP11.96□□□□□ -0.49
LIG3-213ENST00000590630 GCNT7Q6ZNI0 430 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 USP45Q70EL2 814 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 DCP2Q8IU60 420 aaKnown RBP11.96□□□□□ -0.49
LIG3-213ENST00000590630 OXR1Q8N573 874 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.96□□□□□ -0.49
LIG3-213ENST00000590630 TRIM58Q8NG06 486 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 ACTL9Q8TC94 416 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 HTR3CQ8WXA8 447 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 CENPTQ96BT3 561 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 SCRN2Q96FV2 425 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 IMP4Q96G21 291 aaKnown RBP11.96□□□□□ -0.49
LIG3-213ENST00000590630 KLHDC7BQ96G42 594 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 AGAP3Q96P47 875 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 MCCC1Q96RQ3 725 aaPredicted RBP11.96□□□□□ -0.49
LIG3-213ENST00000590630 KLF6Q99612 283 aaPredicted RBP11.96□□□□□ -0.49
LIG3-213ENST00000590630 MYOCQ99972 504 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 FERMT1Q9BQL6 677 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 HERPUD2Q9BSE4 406 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 TDRD1Q9BXT4 1180 aaKnown RBP11.96□□□□□ -0.49
LIG3-213ENST00000590630 CEP41Q9BYV8 373 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 RPL26L1Q9UNX3 145 aaKnown RBP11.96□□□□□ -0.49
LIG3-213ENST00000590630 CA5BQ9Y2D0 317 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 FNDC3AQ9Y2H6 1198 aaKnown RBP11.96□□□□□ -0.49
LIG3-213ENST00000590630 PPIL1Q9Y3C6 166 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 PCDHGB2Q9Y5G2 931 aa11.96□□□□□ -0.49
LIG3-213ENST00000590630 H0Y8X5 98 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 TOR1BO14657 336 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 RAD51BO15315 384 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 YKT6O15498 198 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 PRKCGP05129 697 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 MMP2P08253 660 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 PDHA1P08559 390 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 THEGLP0DJG4 465 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 CYP2A6P11509 494 aaPredicted RBP11.95□□□□□ -0.5
LIG3-213ENST00000590630 CD86P42081 329 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 RABIFP47224 123 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 ARRB1P49407 418 aaPredicted RBP11.95□□□□□ -0.5
LIG3-213ENST00000590630 CCT8P50990 548 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 EPHB1P54762 984 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 CLDN2P57739 230 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 OTUD4Q01804 1114 aaKnown RBP11.95□□□□□ -0.5
LIG3-213ENST00000590630 WASHC5Q12768 1159 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 RALGDSQ12967 914 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 ZNF211Q13398 564 aaPredicted RBP11.95□□□□□ -0.5
LIG3-213ENST00000590630 IHHQ14623 411 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 LRRC14Q15048 493 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 MEI1Q5TIA1 1274 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 AADACL2Q6P093 401 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 LIPIQ6XZB0 460 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 B4GALNT4Q76KP1 1039 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 PTAR1Q7Z6K3 402 aaPredicted RBP11.95□□□□□ -0.5
LIG3-213ENST00000590630 TTC13Q8NBP0 860 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 OR13H1Q8NG92 308 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 PIH1D2Q8WWB5 315 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 TEKT5Q96M29 485 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 ELF4Q99607 663 aaPredicted RBP11.95□□□□□ -0.5
LIG3-213ENST00000590630 ADGRE3Q9BY15 652 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 SLC25A51Q9H1U9 297 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 IL21RQ9HBE5 538 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 PCDH9Q9HC56 1237 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 GPR27Q9NS67 375 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 TM7SF3Q9NS93 570 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 B4GALT6Q9UBX8 382 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 TRHDEQ9UKU6 1024 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 DNPEPQ9ULA0 475 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 SPEGQ15772 3267 aa11.95□□□□□ -0.5
LIG3-213ENST00000590630 A0A1B0GTQ1 180 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 DCDC2BA2VCK2 349 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 POM121BA6NF01 834 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 NPIPB15A6NHN6 443 aaPredicted RBP11.94□□□□□ -0.5
LIG3-213ENST00000590630 H7C0C1 242 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 PSMD11O00231 422 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 LZTS3O60299 673 aaPredicted RBP11.94□□□□□ -0.5
LIG3-213ENST00000590630 PCDHGA12O60330 932 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 RBP3P10745 1247 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 CD59P13987 128 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 CSRP1P21291 193 aaKnown RBP11.94□□□□□ -0.5
LIG3-213ENST00000590630 VIPR1P32241 457 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 ATP5OP48047 213 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 EIF3EP60228 445 aaKnown RBP11.94□□□□□ -0.5
LIG3-213ENST00000590630 SKOR1P84550 965 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 SEMG2Q02383 582 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 KLF1Q13351 362 aaPredicted RBP11.94□□□□□ -0.5
LIG3-213ENST00000590630 GSE1Q14687 1217 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 SUZ12Q15022 739 aaKnown RBP11.94□□□□□ -0.5
LIG3-213ENST00000590630 RPS6KA1Q15418 735 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 SEL1L2Q5TEA6 688 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 Q6ZSR6 202 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 DGLUCYQ7Z3D6 616 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 PIP4P1Q86T03 277 aa11.94□□□□□ -0.5
LIG3-213ENST00000590630 SPATS2Q86XZ4 545 aaKnown RBP11.94□□□□□ -0.5
LIG3-213ENST00000590630 CDKL3Q8IVW4 592 aaPredicted RBP11.94□□□□□ -0.5
LIG3-213ENST00000590630 TP53I13Q8NBR0 393 aaPredicted RBP11.94□□□□□ -0.5
LIG3-213ENST00000590630 TADA1Q96BN2 335 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms