RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 ABI2Q9NYB9 513 aaPredicted RBP7.45□□□□□ -1.22
ZNF540-206ENST00000589117 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.45□□□□□ -1.22
ZNF540-206ENST00000589117 EPS15L1Q9UBC2 864 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 XPR1Q9UBH6 696 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 SUFUQ9UMX1 484 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 PCDHB5Q9Y5E4 795 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 HS3ST4Q9Y661 456 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 hCG_2014768A0A024R1R8 64 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 A0A1W2PQH9 124 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 CCDC78A2IDD5 438 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 MEI4A8MW99 385 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.45□□□□□ -1.22
ZNF540-206ENST00000589117 TMEM189-UBE2V1I3L0A0 370 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 SLC7A4O43246 635 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 MSI1O43347 362 aaKnown RBP7.45□□□□□ -1.22
ZNF540-206ENST00000589117 TADA2AO75478 443 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 RTN3O95197 1032 aaPredicted RBP7.45□□□□□ -1.22
ZNF540-206ENST00000589117 HLA-DQB2P05538 268 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 CPB1P15086 417 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 HSD3B2P26439 372 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 AVPR1AP37288 418 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 ABCG1P45844 678 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 CSRP3P50461 194 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 MTTPP55157 894 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 PRAMEP78395 509 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 STX5Q13190 355 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 HERC3Q15034 1050 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 ACAP2Q15057 778 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 CCDC85BQ15834 202 aaPredicted RBP7.45□□□□□ -1.22
ZNF540-206ENST00000589117 SLC9B1Q4ZJI4 515 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 RALGPS1Q5JS13 557 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 PDE12Q6L8Q7 609 aaKnown RBP7.45□□□□□ -1.22
ZNF540-206ENST00000589117 MSANTD2Q6P1R3 559 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 CCDC81Q6ZN84 652 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 LRRC69Q6ZNQ3 347 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 ARHGAP36Q6ZRI8 547 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 FRMD7Q6ZUT3 714 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 SLC24A5Q71RS6 500 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 DHDDSQ86SQ9 333 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 DENND6AQ8IWF6 608 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 BBS5Q8N3I7 341 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 TRPV1Q8NER1 839 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 NRG4Q8WWG1 115 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 PEX13Q92968 403 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 FAM136AQ96C01 138 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 NXNL1Q96CM4 212 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 LENG8Q96PV6 779 aaPredicted RBP7.45□□□□□ -1.22
ZNF540-206ENST00000589117 ECSITQ9BQ95 431 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 TRMOQ9BU70 441 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 KLHL4Q9C0H6 718 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 ZCWPW1Q9H0M4 648 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 TREX1Q9NSU2 369 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 CLIC5Q9NZA1 410 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 PDP2Q9P2J9 529 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 STK39Q9UEW8 545 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 VPS28Q9UK41 221 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 POMPQ9Y244 141 aa7.45□□□□□ -1.22
ZNF540-206ENST00000589117 NEMP1O14524 444 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 AIM2O14862 343 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 SYN3O14994 580 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 DLX3O60479 287 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 MGEA5O60502 916 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 PENKP01210 267 aaPredicted RBP7.44□□□□□ -1.22
ZNF540-206ENST00000589117 LTA4HP09960 611 aaKnown RBP7.44□□□□□ -1.22
ZNF540-206ENST00000589117 ITGAXP20702 1163 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 PIK3R1P27986 724 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 EPHA3P29320 983 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 ARRB2P32121 409 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 SLC1A2P43004 574 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 MAGEA11P43364 429 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 LEPRP48357 1165 aaKnown RBP7.44□□□□□ -1.22
ZNF540-206ENST00000589117 NUDT2P50583 147 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 YBEYP58557 167 aaPredicted RBP7.44□□□□□ -1.22
ZNF540-206ENST00000589117 SATB1Q01826 763 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 SMARCB1Q12824 385 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 CRHR2Q13324 411 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 BTG3Q14201 252 aaPredicted RBP7.44□□□□□ -1.22
ZNF540-206ENST00000589117 PCSK7Q16549 785 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 LSM12Q3MHD2 195 aaKnown RBP7.44□□□□□ -1.22
ZNF540-206ENST00000589117 PARP15Q460N3 678 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 NOMO2Q5JPE7 1267 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 SH2D4BQ5SQS7 431 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 TSTD2Q5T7W7 516 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 IZUMO2Q6UXV1 221 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 KDELC2Q7Z4H8 507 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 SCD5Q86SK9 330 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 RNF180Q86T96 592 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 GALNT12Q8IXK2 581 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 CENPLQ8N0S6 344 aaPredicted RBP7.44□□□□□ -1.22
ZNF540-206ENST00000589117 CATSPER1Q8NEC5 780 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 OR6P1Q8NGX9 317 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 ZNF296Q8WUU4 475 aaPredicted RBP7.44□□□□□ -1.22
ZNF540-206ENST00000589117 CCDC124Q96CT7 223 aaKnown RBP7.44□□□□□ -1.22
ZNF540-206ENST00000589117 IMP4Q96G21 291 aaKnown RBP7.44□□□□□ -1.22
ZNF540-206ENST00000589117 TMEM209Q96SK2 561 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 MRPL1Q9BYD6 325 aaKnown RBP7.44□□□□□ -1.22
ZNF540-206ENST00000589117 NUF2Q9BZD4 464 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 Q9H521 79 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 RETREG1Q9H6L5 497 aa7.44□□□□□ -1.22
ZNF540-206ENST00000589117 NT5MQ9NPB1 228 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms