RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 LZTR1Q8N653 840 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 HIC2Q96JB3 615 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 CSPG4P5Q96PW8 444 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 NUP85Q9BW27 656 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 ANAPC7Q9UJX3 599 aa20.6■□□□□ 0.89
SHMT1-209ENST00000582653 ASXL3Q9C0F0 2248 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 A8MX80 341 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 TCEA3O75764 348 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 GYPCP04921 128 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 MMP12P39900 470 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 ARL4AP40617 200 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 HK3P52790 923 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 INPP5AQ14642 412 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 LBRQ14739 615 aaKnown RBP20.59■□□□□ 0.89
SHMT1-209ENST00000582653 PERM1Q5SV97 790 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 ESRP1Q6NXG1 681 aaKnown RBP20.59■□□□□ 0.89
SHMT1-209ENST00000582653 IGF2-ASQ6U949 168 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 SPACA3Q8IXA5 215 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 SLC35F3Q8IY50 421 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 FSTL5Q8N475 847 aaPredicted RBP20.59■□□□□ 0.89
SHMT1-209ENST00000582653 PAF1Q8N7H5 531 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 LSM14AQ8ND56 463 aaKnown RBP20.59■□□□□ 0.89
SHMT1-209ENST00000582653 WDR48Q8TAF3 677 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 NAT6Q93015 286 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 TSACCQ96A04 125 aaPredicted RBP20.59■□□□□ 0.89
SHMT1-209ENST00000582653 ECHDC3Q96DC8 303 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 APOOQ9BUR5 198 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 PCDH18Q9HCL0 1135 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 LUC7L2Q9Y383 392 aaKnown RBP20.59■□□□□ 0.89
SHMT1-209ENST00000582653 OR1A2Q9Y585 309 aa20.59■□□□□ 0.89
SHMT1-209ENST00000582653 BAHCC1Q9P281 2608 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 TK2O00142 265 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 TRAFD1O14545 582 aaPredicted RBP20.58■□□□□ 0.89
SHMT1-209ENST00000582653 PEX11BO96011 259 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 PCCBP05166 539 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 CYP1A2P05177 515 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 CELA2BP08218 269 aaPredicted RBP20.58■□□□□ 0.89
SHMT1-209ENST00000582653 HTR1BP28222 390 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 PCBP4P57723 403 aaKnown RBP20.58■□□□□ 0.89
SHMT1-209ENST00000582653 RALGDSQ12967 914 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 ELOCQ15369 112 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 TCEA2Q15560 299 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 CCDC122Q5T0U0 273 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 TMCO3Q6UWJ1 677 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 ENPP7Q6UWV6 458 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 GPR155Q7Z3F1 870 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 PLA2G15Q8NCC3 412 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 SCG3Q8WXD2 468 aaKnown RBP20.58■□□□□ 0.89
SHMT1-209ENST00000582653 FCRL3Q96P31 734 aaPredicted RBP20.58■□□□□ 0.89
SHMT1-209ENST00000582653 PSKH2Q96QS6 385 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 LGMNQ99538 433 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 SEPT3Q9UH03 358 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 IP6K2Q9UHH9 426 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 PADI4Q9UM07 663 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 ENTPD2Q9Y5L3 495 aa20.58■□□□□ 0.89
SHMT1-209ENST00000582653 LRRK1Q38SD2 2015 aa20.58■□□□□ 0.88
SHMT1-209ENST00000582653 ALPIP09923 528 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 CTSEP14091 401 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 CASP14P31944 242 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 POLR2LP62875 67 aaKnown RBP20.57■□□□□ 0.88
SHMT1-209ENST00000582653 SLC25A11Q02978 314 aaKnown RBP20.57■□□□□ 0.88
SHMT1-209ENST00000582653 ZSCAN23Q3MJ62 389 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 TMCO4Q5TGY1 634 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 ALKBH5Q6P6C2 394 aaKnown RBP20.57■□□□□ 0.88
SHMT1-209ENST00000582653 CRTC1Q6UUV9 634 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 RBM44Q6ZP01 1051 aaKnown RBP20.57■□□□□ 0.88
SHMT1-209ENST00000582653 RD3Q7Z3Z2 195 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 CPNE8Q86YQ8 564 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 HID1Q8IV36 788 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 PGBD5Q8N414 524 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 NIPA2Q8N8Q9 360 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 ZNF599Q96NL3 588 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 SLC46A1Q96NT5 459 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 ASCL3Q9NQ33 180 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 DOLKQ9UPQ8 538 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 PCDHGC4Q9Y5F7 938 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 BPTFQ12830 3046 aa20.57■□□□□ 0.88
SHMT1-209ENST00000582653 TEX51A0A1B0GUA7 166 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 CASC3O15234 703 aaKnown RBP20.56■□□□□ 0.88
SHMT1-209ENST00000582653 MAFKO60675 156 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 RECQL5O94762 991 aaPredicted RBP20.56■□□□□ 0.88
SHMT1-209ENST00000582653 RASGRP1O95267 797 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 SSR1P43307 286 aaKnown RBP20.56■□□□□ 0.88
SHMT1-209ENST00000582653 RENBPP51606 427 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 AP1S1P61966 158 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 MMRN1Q13201 1228 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 NFATC4Q14934 902 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 ALG11Q2TAA5 492 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 KCTD16Q68DU8 428 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 LIPIQ6XZB0 460 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 ATL2Q8NHH9 583 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 TEKT4Q8WW24 435 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 ATXN7L3BQ96GX2 97 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 CCDC3Q9BQI4 270 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 THSD1Q9NS62 852 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 SATB2Q9UPW6 733 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 PCDHGA8Q9Y5G5 932 aa20.56■□□□□ 0.88
SHMT1-209ENST00000582653 ATXN7O15265 892 aaPredicted RBP20.55■□□□□ 0.88
SHMT1-209ENST00000582653 TNFP01375 233 aa20.55■□□□□ 0.88
SHMT1-209ENST00000582653 CD48P09326 243 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms