RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 CENPIQ92674 756 aaPredicted RBP10.45□□□□□ -0.74
SS18-221ENST00000582448 CAVIN3Q969G5 261 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 HAUS1Q96CS2 278 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 PIWIL1Q96J94 861 aaKnown RBP10.45□□□□□ -0.74
SS18-221ENST00000582448 C8orf48Q96LL4 319 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 SLC2A13Q96QE2 648 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 KCNK16Q96T55 309 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 PKMYT1Q99640 499 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 FERMT1Q9BQL6 677 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 TRIM31Q9BZY9 425 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 TSPYL1Q9H0U9 437 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 FBXO44Q9H4M3 255 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 FAM204AQ9H8W3 233 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 PRDM7Q9NQW5 492 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 SEMA3GQ9NS98 782 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 OGFRQ9NZT2 677 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 CFAP97Q9P2B7 532 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 ADAM30Q9UKF2 790 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 PILRBQ9UKJ0 227 aa10.45□□□□□ -0.74
SS18-221ENST00000582448 DRG1Q9Y295 367 aaKnown RBP10.45□□□□□ -0.74
SS18-221ENST00000582448 POLR3KQ9Y2Y1 108 aaPredicted RBP10.45□□□□□ -0.74
SS18-221ENST00000582448 GON4LQ3T8J9 2241 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 ASCC3Q8N3C0 2202 aaKnown RBP10.44□□□□□ -0.74
SS18-221ENST00000582448 H0Y626 953 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 APOC4-APOC2K7ER74 178 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 M0QYT0 321 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 SLC9A3R1O14745 358 aaPredicted RBP10.44□□□□□ -0.74
SS18-221ENST00000582448 APOL1O14791 398 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 LIASO43766 372 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 SH3BP5O60239 455 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 CST8O60676 142 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 ZNF189O75820 626 aaPredicted RBP10.44□□□□□ -0.74
SS18-221ENST00000582448 TRIM16O95361 564 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 APOC2P02655 101 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 NCAM1P13591 858 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 TCF3P15923 654 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 ADCY8P40145 1251 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 GRIA2P42262 883 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 MAGEA11P43364 429 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 TNFRSF4P43489 277 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 KIR2DL1P43626 348 aaPredicted RBP10.44□□□□□ -0.74
SS18-221ENST00000582448 CLCN7P51798 805 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 HDAC4P56524 1084 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 ZNF33AQ06730 810 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 NME3Q13232 169 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 PTK6Q13882 451 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 SIX1Q15475 284 aaPredicted RBP10.44□□□□□ -0.74
SS18-221ENST00000582448 PPP6R3Q5H9R7 873 aaPredicted RBP10.44□□□□□ -0.74
SS18-221ENST00000582448 BTBD8Q5XKL5 378 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 DUPD1Q68J44 220 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 TXNRD3NBQ6F5E7 133 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 PM20D1Q6GTS8 502 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 TTC27Q6P3X3 843 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 BZW1Q7L1Q6 419 aaKnown RBP10.44□□□□□ -0.74
SS18-221ENST00000582448 BEND5Q7L4P6 421 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 FBXO27Q8NI29 283 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 RNF139Q8WU17 664 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 ATG4AQ8WYN0 398 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 SEC14L1Q92503 715 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 P3H4Q92791 437 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 RNF34Q969K3 372 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 SNF8Q96H20 258 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 HSPA12BQ96MM6 686 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 FMO2Q99518 471 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 KRTAP4-12Q9BQ66 201 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 ZNF670Q9BS34 389 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 TRIM51Q9BSJ1 452 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 SNRNP25Q9BV90 132 aaKnown RBP10.44□□□□□ -0.74
SS18-221ENST00000582448 FUT8Q9BYC5 575 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 DHX35Q9H5Z1 703 aaKnown RBP10.44□□□□□ -0.74
SS18-221ENST00000582448 ABCC13Q9NSE7 274 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 ZNF446Q9NWS9 450 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 TSC2P49815 1807 aa10.44□□□□□ -0.74
SS18-221ENST00000582448 SYNJ2BP-COX16A0A087WUM0 186 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 ZNF840PA6NDX5 716 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 ZSCAN5CA6NGD5 496 aaPredicted RBP10.43□□□□□ -0.74
SS18-221ENST00000582448 C3orf70A6NLC5 250 aaPredicted RBP10.43□□□□□ -0.74
SS18-221ENST00000582448 YJEFN3A6XGL0 299 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 HHLA1C9JL84 531 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 E7ENQ6 273 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 ENDOD1O94919 500 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 RTN3O95197 1032 aaPredicted RBP10.43□□□□□ -0.74
SS18-221ENST00000582448 BPNT1O95861 308 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 CBX7O95931 251 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 ITGAVP06756 1048 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 SYPP08247 313 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 SERPINF2P08697 491 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 TGM2P21980 687 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 ACTN2P35609 894 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 DPP6P42658 865 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 KCNJ1P48048 391 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 ZNF135P52742 658 aaPredicted RBP10.43□□□□□ -0.74
SS18-221ENST00000582448 SLC5A3P53794 718 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 YWHAGP61981 247 aaKnown RBP eCLIP10.43□□□□□ -0.74
SS18-221ENST00000582448 SLC7A9P82251 487 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 TAF10Q12962 218 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 DPYSL3Q14195 570 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 TRIP6Q15654 476 aaKnown RBP10.43□□□□□ -0.74
SS18-221ENST00000582448 TAZQ16635 292 aa10.43□□□□□ -0.74
SS18-221ENST00000582448 COL28A1Q2UY09 1125 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms