RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 LCNL1Q6ZST4 164 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 Q6ZVL8 140 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 PIWIL3Q7Z3Z3 882 aaKnown RBP6.3□□□□□ -1.4
VPS53-212ENST00000572259 FRMD5Q7Z6J6 570 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 TAX1BP1Q86VP1 789 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 CATSPER3Q86XQ3 398 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 ULK2Q8IYT8 1036 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 HACE1Q8IYU2 909 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 C17orf53Q8N3J3 647 aaPredicted RBP6.3□□□□□ -1.4
VPS53-212ENST00000572259 LINC01465Q8N7H1 131 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 C4orf32Q8N8J7 132 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 RASSF8Q8NHQ8 419 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 CCHCR1Q8TD31 782 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 GIMAP1Q8WWP7 306 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 PRPF31Q8WWY3 499 aaKnown RBP6.3□□□□□ -1.4
VPS53-212ENST00000572259 CFHR4Q92496 578 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 IFT74Q96LB3 600 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 NLRP4Q96MN2 994 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 TRAPPC9Q96Q05 1148 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 RBM15Q96T37 977 aaKnown RBP eCLIP6.3□□□□□ -1.4
VPS53-212ENST00000572259 ATP6V0BQ99437 205 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 CITED2Q99967 270 aaPredicted RBP6.3□□□□□ -1.4
VPS53-212ENST00000572259 TCF25Q9BQ70 676 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 SH2D3AQ9BRG2 576 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 TTYH1Q9H313 450 aaPredicted RBP6.3□□□□□ -1.4
VPS53-212ENST00000572259 NELFAQ9H3P2 528 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 AGO3Q9H9G7 860 aaKnown RBP6.3□□□□□ -1.4
VPS53-212ENST00000572259 PDE7BQ9NP56 450 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 SLC35C2Q9NQQ7 365 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 RGS18Q9NS28 235 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 LANCL2Q9NS86 450 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 DECR2Q9NUI1 292 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 TAS2R10Q9NYW0 307 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 ANAPC5Q9UJX4 755 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 CCL27Q9Y4X3 112 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 ANGPTL3Q9Y5C1 460 aa6.3□□□□□ -1.4
VPS53-212ENST00000572259 SIP14410 1827 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 ARID2Q68CP9 1835 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 PTPRSQ13332 1948 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 TMEM150BA6NC51 233 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 VWA3AA6NCI4 1184 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 OTOL1A6NHN0 477 aaPredicted RBP6.29□□□□□ -1.4
VPS53-212ENST00000572259 MATN2O00339 956 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 MUSKO15146 869 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 PPFIA2O75334 1257 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 SEC22BO75396 215 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 MED24O75448 989 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 METTL18O95568 372 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 TNNT1P13805 278 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 CYP11B2P19099 503 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 AXLP30530 894 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 LONP1P36776 959 aaKnown RBP6.29□□□□□ -1.4
VPS53-212ENST00000572259 RPS19P39019 145 aaKnown RBP6.29□□□□□ -1.4
VPS53-212ENST00000572259 PAFAH1B1P43034 410 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 TAP1Q03518 808 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 COASYQ13057 564 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 MORF4L2Q15014 288 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 ZRSR1Q15695 479 aaKnown RBP6.29□□□□□ -1.4
VPS53-212ENST00000572259 PLEKHS1Q5SXH7 462 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 SPOUT1Q5T280 376 aaKnown RBP6.29□□□□□ -1.4
VPS53-212ENST00000572259 TWF2Q6IBS0 349 aaKnown RBP6.29□□□□□ -1.4
VPS53-212ENST00000572259 INO80CQ6PI98 192 aaPredicted RBP6.29□□□□□ -1.4
VPS53-212ENST00000572259 UNC13DQ70J99 1090 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 ZER1Q7Z7L7 766 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 FAM228AQ86W67 206 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 NLRC5Q86WI3 1866 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 METTL23Q86XA0 190 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 KRT73Q86Y46 540 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 ZBTB8OSQ8IWT0 167 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 RNF149Q8NC42 400 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 CNNM3Q8NE01 707 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 ANKRD20A12PQ8NF67 263 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 IPMKQ8NFU5 416 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 SCAMP5Q8TAC9 235 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 MDM1Q8TC05 714 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 KCNG4Q8TDN1 519 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 SLC22A17Q8WUG5 538 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 ZFAND2BQ8WV99 257 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 ARNTL2Q8WYA1 636 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 MAML1Q92585 1016 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 RSC1A1Q92681 617 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 HOXB13Q92826 284 aaPredicted RBP6.29□□□□□ -1.4
VPS53-212ENST00000572259 KIFAP3Q92845 792 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 FAM162AQ96A26 154 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 TMEM143Q96AN5 459 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 KTI12Q96EK9 354 aaPredicted RBP6.29□□□□□ -1.4
VPS53-212ENST00000572259 CLPTM1LQ96KA5 538 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 ZNF396Q96N95 335 aaPredicted RBP6.29□□□□□ -1.4
VPS53-212ENST00000572259 GUCD1Q96NT3 240 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 GBP5Q96PP8 586 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 TMEM237Q96Q45 408 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 TIPINQ9BVW5 301 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 TP63Q9H3D4 680 aaPredicted RBP6.29□□□□□ -1.4
VPS53-212ENST00000572259 LDAHQ9H6V9 325 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 MSL2Q9HCI7 577 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 PARD6AQ9NPB6 346 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 FANCFQ9NPI8 374 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 G6PC2Q9NQR9 355 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 TMEM140Q9NV12 185 aa6.29□□□□□ -1.4
VPS53-212ENST00000572259 HCFC1R1Q9NWW0 138 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms