RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 RHOT1Q8IXI2 618 aa6.99□□□□□ -1.29
CHD3-213ENST00000571249 ZNF511Q8NB15 262 aa6.99□□□□□ -1.29
CHD3-213ENST00000571249 KCTD13Q8WZ19 329 aa6.99□□□□□ -1.29
CHD3-213ENST00000571249 ZNF516Q92618 1163 aa6.99□□□□□ -1.29
CHD3-213ENST00000571249 ERCC4Q92889 916 aaPredicted RBP6.99□□□□□ -1.29
CHD3-213ENST00000571249 CCDC120Q96HB5 630 aa6.99□□□□□ -1.29
CHD3-213ENST00000571249 C8orf76Q96K31 380 aa6.99□□□□□ -1.29
CHD3-213ENST00000571249 ZNF396Q96N95 335 aaPredicted RBP6.99□□□□□ -1.29
CHD3-213ENST00000571249 TWNKQ96RR1 684 aa6.99□□□□□ -1.29
CHD3-213ENST00000571249 SRPK1Q96SB4 655 aaKnown RBP6.99□□□□□ -1.29
CHD3-213ENST00000571249 KCTD15Q96SI1 283 aaPredicted RBP6.99□□□□□ -1.29
CHD3-213ENST00000571249 RUFY1Q96T51 708 aa6.99□□□□□ -1.29
CHD3-213ENST00000571249 C1QTNF2Q9BXJ5 285 aa6.99□□□□□ -1.29
CHD3-213ENST00000571249 HDAC8Q9BY41 377 aa6.99□□□□□ -1.29
CHD3-213ENST00000571249 DUSP16Q9BY84 665 aa6.99□□□□□ -1.29
CHD3-213ENST00000571249 FOXP1Q9H334 677 aaPredicted RBP6.99□□□□□ -1.29
CHD3-213ENST00000571249 C12orf49Q9H741 205 aa6.99□□□□□ -1.29
CHD3-213ENST00000571249 KIAA0391O15091 583 aaKnown RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 ZNF185O15231 689 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 NUDT21O43809 227 aaKnown RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 CEACAM4O75871 244 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 HEXAP06865 529 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 INHBBP09529 407 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 THRAP10827 490 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 IDEP14735 1019 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 PDGFRAP16234 1089 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 ADSLP30566 484 aaPredicted RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 STAT1P42224 750 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 ST13P50502 369 aaKnown RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 CASP5P51878 434 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 YPEL5P62699 121 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 YBX1P67809 324 aaKnown RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 HLTFQ14527 1009 aaKnown RBP eCLIP6.98□□□□□ -1.29
CHD3-213ENST00000571249 CLPPQ16740 277 aaPredicted RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 ALG11Q2TAA5 492 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 C11orf91Q3C1V1 193 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.98□□□□□ -1.29
CHD3-213ENST00000571249 C4orf48Q5BLP8 95 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 MS4A13Q5J8X5 152 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 RBM43Q6ZSC3 357 aaKnown RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 UNC45BQ8IWX7 931 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 ZNF808Q8N4W9 903 aaPredicted RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 ESX1Q8N693 406 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 CHST14Q8NCH0 376 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 GALNT6Q8NCL4 622 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 FAM46DQ8NEK8 389 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 TMIEQ8NEW7 156 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 RAD54LQ92698 747 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 RELTQ969Z4 430 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 DDX50Q9BQ39 737 aaKnown RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 NUCKS1Q9H1E3 243 aaKnown RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 SCHIP1Q9P0W5 487 aaPredicted RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 SLC25A13Q9UJS0 675 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 AJAP1Q9UKB5 411 aaPredicted RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 B3GNT3Q9Y2A9 372 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 FADS3Q9Y5Q0 445 aa6.98□□□□□ -1.29
CHD3-213ENST00000571249 MORC2Q9Y6X9 1032 aaPredicted RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 NYNRINQ9P2P1 1898 aaKnown RBP6.98□□□□□ -1.29
CHD3-213ENST00000571249 A6NJY4 79 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 A8MU76 341 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 B4DGG1 531 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 CPNE3O75131 537 aaKnown RBP6.97□□□□□ -1.29
CHD3-213ENST00000571249 RASGRP1O95267 797 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 YEATS4O95619 227 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 ZBED1O96006 694 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 IGLV3-27P01718 113 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 PRNPP04156 253 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 RPLP1P05386 114 aaKnown RBP6.97□□□□□ -1.29
CHD3-213ENST00000571249 ADRB3P13945 408 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 TRIM21P19474 475 aaKnown RBP6.97□□□□□ -1.29
CHD3-213ENST00000571249 CSF2RBP32927 897 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 MAN1A1P33908 653 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 IGFALSP35858 605 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 NASPP49321 788 aaPredicted RBP6.97□□□□□ -1.29
CHD3-213ENST00000571249 TKTL1P51854 596 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 NEK3P51956 506 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 MAZP56270 477 aaKnown RBP6.97□□□□□ -1.29
CHD3-213ENST00000571249 RPS18P62269 152 aaKnown RBP6.97□□□□□ -1.29
CHD3-213ENST00000571249 CSNK1G2P78368 415 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 MC2RQ01718 297 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 CENPCQ03188 943 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 BIRC3Q13489 604 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 PSMD6Q15008 389 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 FOXD4L6Q3SYB3 417 aaPredicted RBP6.97□□□□□ -1.29
CHD3-213ENST00000571249 TBCELQ5QJ74 424 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 BSPRYQ5W0U4 402 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 PM20D1Q6GTS8 502 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 FAM173BQ6P4H8 233 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 ENPP7Q6UWV6 458 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 CEACAM20Q6UY09 585 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 FOXD4L3Q6VB84 417 aaPredicted RBP6.97□□□□□ -1.29
CHD3-213ENST00000571249 BHLHA9Q7RTU4 235 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 TAF8Q7Z7C8 310 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 CUZD1Q86UP6 607 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 PIGZQ86VD9 579 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 SLC47A2Q86VL8 602 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 VPS36Q86VN1 386 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 DENND6BQ8NEG7 585 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 WFDC11Q8NEX6 87 aa6.97□□□□□ -1.29
CHD3-213ENST00000571249 ANKK1Q8NFD2 765 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms