RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PCBP1Q15365 356 aaKnown RBP eCLIP10.9□□□□□ -0.66
CLK3-226ENST00000569406 CARM1Q86X55 608 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 PM20D2Q8IYS1 436 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 CLYBLQ8N0X4 340 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 DOK1Q99704 481 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 TRAF4Q9BUZ4 470 aaPredicted RBP10.9□□□□□ -0.66
CLK3-226ENST00000569406 TEX13BQ9BXU2 312 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 ASNSD1Q9NWL6 643 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 SYBUQ9NX95 663 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 SLC39A1Q9NY26 324 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 KCNK4Q9NYG8 393 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 TAS2R7Q9NYW3 318 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 WHRNQ9P202 907 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 ARHGAP28Q9P2N2 729 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 ANK1P16157 1881 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 WDR64B1ANS9 1081 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 PITPNM1O00562 1244 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 ITGBL1O95965 494 aaPredicted RBP10.9□□□□□ -0.67
CLK3-226ENST00000569406 ATF7P17544 494 aaPredicted RBP10.9□□□□□ -0.67
CLK3-226ENST00000569406 YAP1P46937 504 aaKnown RBP10.9□□□□□ -0.67
CLK3-226ENST00000569406 ALDH7A1P49419 539 aaKnown RBP10.9□□□□□ -0.67
CLK3-226ENST00000569406 PRIM2P49643 509 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 BPIFB3P59826 476 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 FUT11Q495W5 492 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 FBXO43Q4G163 708 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 AASDHQ4L235 1098 aaPredicted RBP10.9□□□□□ -0.67
CLK3-226ENST00000569406 KCNT2Q6UVM3 1135 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 CFAP77Q6ZQR2 320 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 BTN2A1Q7KYR7 527 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 TAS1R2Q8TE23 839 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 FRS2Q8WU20 508 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 VPS39Q96JC1 886 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 GLT1D1Q96MS3 346 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 OPALINQ96PE5 141 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 EBF4Q9BQW3 602 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 MLPHQ9BV36 600 aaPredicted RBP10.9□□□□□ -0.67
CLK3-226ENST00000569406 PRRG3Q9BZD7 231 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 VPS11Q9H270 941 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 RNF146Q9NTX7 359 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 ALG6Q9Y672 507 aa10.9□□□□□ -0.67
CLK3-226ENST00000569406 SYNCRIPO60506 623 aaKnown RBP10.89□□□□□ -0.67
CLK3-226ENST00000569406 TGDSO95455 350 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 TCN1P20061 433 aaPredicted RBP10.89□□□□□ -0.67
CLK3-226ENST00000569406 RFX1P22670 979 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 RPS12P25398 132 aaKnown RBP10.89□□□□□ -0.67
CLK3-226ENST00000569406 DSG3P32926 999 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 ERVK-8P63133 956 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 ALCAMQ13740 583 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 SPATS1Q496A3 300 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 Q5BKY6 102 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 PDPRQ8NCN5 879 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 ZSCAN18Q8TBC5 510 aaPredicted RBP10.89□□□□□ -0.67
CLK3-226ENST00000569406 ATG4AQ8WYN0 398 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 LTBP3Q9NS15 1303 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 KRT87PA6NCN2 255 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 LINC00587B1AMM8 73 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 PIK3R2O00459 728 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 PLD2O14939 933 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 BET1O15155 118 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 TBX1O43435 398 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 SORBS3O60504 671 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 SPNP16150 400 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 TSPAN7P41732 249 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 MAGEA11P43364 429 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 HMGCS2P54868 508 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 UBE3AQ05086 875 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 MMRN1Q13201 1228 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 SELPLGQ14242 412 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 WDR44Q5JSH3 913 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 RNASEH2BQ5TBB1 312 aaKnown RBP10.89□□□□□ -0.67
CLK3-226ENST00000569406 BHLHE22Q8NFJ8 381 aaPredicted RBP10.89□□□□□ -0.67
CLK3-226ENST00000569406 TEX47Q8TBZ9 253 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 SLC9A6Q92581 669 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 KLRG1Q96E93 195 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 NRBF2Q96F24 287 aa10.89□□□□□ -0.67
CLK3-226ENST00000569406 HMX3A6NHT5 357 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 CLDN3O15551 220 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 PHGDHO43175 533 aaKnown RBP10.88□□□□□ -0.67
CLK3-226ENST00000569406 LPXNO60711 386 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 GCATO75600 419 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 SLC4A1P02730 911 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 UGT2B4P06133 528 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 TMEM191BP0C7N4 346 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 ZNF250P15622 560 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 DNAJB1P25685 340 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 AXLP30530 894 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 JAK3P52333 1124 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 PCDH1Q08174 1060 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 ABRQ12979 859 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 BTN1A1Q13410 526 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 GALEQ14376 348 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 PRKD1Q15139 912 aaPredicted RBP10.88□□□□□ -0.67
CLK3-226ENST00000569406 MGAT5BQ3V5L5 792 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 BROXQ5VW32 411 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 ARHGAP36Q6ZRI8 547 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 OR7D4Q8NG98 312 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 OR6F1Q8NGZ6 308 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 S100ZQ8WXG8 99 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 GPRASP2Q96D09 838 aa10.88□□□□□ -0.67
CLK3-226ENST00000569406 HERPUD2Q9BSE4 406 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms