RNA–Protein interactions for RNA: ENST00000566756.5

CMTM3-213, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,950 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-213ENST00000566756 USP41Q3LFD5 358 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 IRAK1BP1Q5VVH5 260 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 TMEM198Q66K66 360 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 NEPROQ6NW34 567 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 CTU1Q7Z7A3 348 aaKnown RBP16.86■□□□□ 0.29
CMTM3-213ENST00000566756 SLC22A9Q8IVM8 553 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 CCNYL1Q8N7R7 359 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 BHLHE22Q8NFJ8 381 aaPredicted RBP16.86■□□□□ 0.29
CMTM3-213ENST00000566756 ZNF419Q96HQ0 510 aaPredicted RBP16.86■□□□□ 0.29
CMTM3-213ENST00000566756 ZFRQ96KR1 1074 aaKnown RBP16.86■□□□□ 0.29
CMTM3-213ENST00000566756 MRGPRX2Q96LB1 330 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 POMKQ9H5K3 350 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 ZNF696Q9H7X3 374 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 F8W810 466 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 TXNDC9O14530 226 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 HLA-DQB2P05538 268 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 CD1EP15812 388 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 GRIA2P42262 883 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 DPP6P42658 865 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 ATN1P54259 1190 aaPredicted RBP16.86■□□□□ 0.29
CMTM3-213ENST00000566756 MS4A2Q01362 244 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 SULT2A1Q06520 285 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 TRAP1Q12931 704 aaKnown RBP16.86■□□□□ 0.29
CMTM3-213ENST00000566756 ZNF470Q6ECI4 717 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 KLC3Q6P597 504 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 RTL3Q8N8U3 475 aaKnown RBP16.86■□□□□ 0.29
CMTM3-213ENST00000566756 SPPL2BQ8TCT7 592 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 NAT14Q8WUY8 206 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 MOCOSQ96EN8 888 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 DUS3LQ96G46 650 aaKnown RBP16.86■□□□□ 0.29
CMTM3-213ENST00000566756 OMDQ99983 421 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 SLC25A51Q9H1U9 297 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 ATP13A1Q9HD20 1204 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 RBM22Q9NW64 420 aaKnown RBP eCLIP16.86■□□□□ 0.29
CMTM3-213ENST00000566756 LRFN2Q9ULH4 789 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 PADI4Q9UM07 663 aa16.86■□□□□ 0.29
CMTM3-213ENST00000566756 IPO13O94829 963 aaKnown RBP16.85■□□□□ 0.29
CMTM3-213ENST00000566756 TNFAIP8O95379 198 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 C8BP07358 591 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 LTA4HP09960 611 aaKnown RBP16.85■□□□□ 0.29
CMTM3-213ENST00000566756 SMIM18P0DKX4 95 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 BDNFP23560 247 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 RPL5P46777 297 aaKnown RBP16.85■□□□□ 0.29
CMTM3-213ENST00000566756 ATP4BP51164 291 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 TLE2Q04725 743 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 PTK2BQ14289 1009 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 ZNF460Q14592 562 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 ACAP2Q15057 778 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 TCTN1Q2MV58 587 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 HACD2Q6Y1H2 254 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 LRRTM3Q86VH5 581 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 NPAS4Q8IUM7 802 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 PPP1R36Q96LQ0 422 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 C1orf74Q96LT6 269 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 MRPL9Q9BYD2 267 aaKnown RBP16.85■□□□□ 0.29
CMTM3-213ENST00000566756 SIK2Q9H0K1 926 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 VPS45Q9NRW7 570 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 TMLHEQ9NVH6 421 aa16.85■□□□□ 0.29
CMTM3-213ENST00000566756 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.84■□□□□ 0.29
CMTM3-213ENST00000566756 CCDC78A2IDD5 438 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 CFLARO15519 480 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 CRTAMO95727 393 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 LSAMPQ13449 338 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 KDELC1Q6UW63 502 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 SCLYQ96I15 445 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 FCRL2Q96LA5 508 aaPredicted RBP16.84■□□□□ 0.29
CMTM3-213ENST00000566756 TMEM175Q9BSA9 504 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 MRPS26Q9BYN8 205 aaKnown RBP16.84■□□□□ 0.29
CMTM3-213ENST00000566756 SLC2A6Q9UGQ3 507 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 G3BP2Q9UN86 482 aaKnown RBP16.84■□□□□ 0.29
CMTM3-213ENST00000566756 AP4B1Q9Y6B7 739 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 MYLKQ15746 1914 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 ALDH2P05091 517 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 PMLP29590 882 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 PKNOX1P55347 436 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 PSME3P61289 254 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 TNK2Q07912 1038 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 TRIM25Q14258 630 aaKnown RBP16.84■□□□□ 0.29
CMTM3-213ENST00000566756 TRIM60Q495X7 471 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 BTBD8Q5XKL5 378 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 FBXO46Q6PJ61 603 aaPredicted RBP16.84■□□□□ 0.29
CMTM3-213ENST00000566756 CNSTQ6PJW8 725 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 ALDH16A1Q8IZ83 802 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 LILRA2Q8N149 483 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 TMEM102Q8N9M5 508 aaPredicted RBP16.84■□□□□ 0.29
CMTM3-213ENST00000566756 DGCR14Q96DF8 476 aaKnown RBP16.84■□□□□ 0.29
CMTM3-213ENST00000566756 UBXN10Q96LJ8 280 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 PRICKLE1Q96MT3 831 aaPredicted RBP16.84■□□□□ 0.29
CMTM3-213ENST00000566756 TMEM209Q96SK2 561 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 RHOBTB2Q9BYZ6 727 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 PCDHGA7Q9Y5G6 932 aa16.84■□□□□ 0.29
CMTM3-213ENST00000566756 A8MT66 165 aa16.83■□□□□ 0.28
CMTM3-213ENST00000566756 KCNU1A8MYU2 1149 aa16.83■□□□□ 0.28
CMTM3-213ENST00000566756 SLC7A4O43246 635 aa16.83■□□□□ 0.28
CMTM3-213ENST00000566756 PMPCBO75439 489 aa16.83■□□□□ 0.28
CMTM3-213ENST00000566756 RTN3O95197 1032 aaPredicted RBP16.83■□□□□ 0.28
CMTM3-213ENST00000566756 LRP8Q14114 963 aa16.83■□□□□ 0.28
CMTM3-213ENST00000566756 MRPL58Q14197 206 aaKnown RBP16.83■□□□□ 0.28
CMTM3-213ENST00000566756 ADRM1Q16186 407 aa16.83■□□□□ 0.28
CMTM3-213ENST00000566756 DCP1BQ8IZD4 617 aaKnown RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms