RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CAMK1DQ8IU85 385 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 RAB7BQ96AH8 199 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 QKIQ96PU8 341 aaKnown RBP eCLIP17.39■□□□□ 0.37
CLN3-217ENST00000565354 SEMA3CQ99985 751 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 HERPUD2Q9BSE4 406 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 MIR1-1HGQ9H1L0 117 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 CARD9Q9H257 536 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 PREBQ9HCU5 417 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 JRKLQ9Y4A0 524 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 PCDHGB2Q9Y5G2 931 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 TMEM131Q92545 1883 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 NUMA1Q14980 2115 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 TRABD2BA6NFA1 517 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 METTL12A8MUP2 240 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 BCAT2O15382 392 aaPredicted RBP17.38■□□□□ 0.37
CLN3-217ENST00000565354 FLRT2O43155 660 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 CA4P22748 312 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 CES1P23141 567 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 CYP4F3Q08477 520 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 ZBTB17Q13105 803 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 PRKD1Q15139 912 aaPredicted RBP17.38■□□□□ 0.37
CLN3-217ENST00000565354 HLA-BQ31612 363 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 SLC45A4Q5BKX6 768 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 DARS2Q6PI48 645 aaKnown RBP17.38■□□□□ 0.37
CLN3-217ENST00000565354 BRAT1Q6PJG6 821 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 SLC35F6Q8N357 371 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 GALNT15Q8N3T1 639 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 RHBDD1Q8TEB9 315 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 AGAP3Q96P47 875 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 IL12RB2Q99665 862 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 CEP41Q9BYV8 373 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 NOD2Q9HC29 1040 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 KLHL8Q9P2G9 620 aaPredicted RBP17.38■□□□□ 0.37
CLN3-217ENST00000565354 DKK3Q9UBP4 350 aa17.38■□□□□ 0.37
CLN3-217ENST00000565354 A0A087WV48 116 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 ENC1O14682 589 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 RNGTTO60942 597 aaKnown RBP17.37■□□□□ 0.37
CLN3-217ENST00000565354 SOCS5O75159 536 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 RBP3P10745 1247 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 CR2P20023 1033 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 NFKBIAP25963 317 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 POLR2LP62875 67 aaKnown RBP17.37■□□□□ 0.37
CLN3-217ENST00000565354 DSC2Q02487 901 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 ERAP2Q6P179 960 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 PRPF39Q86UA1 669 aaKnown RBP17.37■□□□□ 0.37
CLN3-217ENST00000565354 MARCH9Q86YJ5 346 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 HCAR2Q8TDS4 363 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 HTR3CQ8WXA8 447 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 FAM131CQ96AQ9 280 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 FAM118BQ9BPY3 351 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 TLR10Q9BXR5 811 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 EIF2B4Q9UI10 523 aaKnown RBP17.37■□□□□ 0.37
CLN3-217ENST00000565354 TPX2Q9ULW0 747 aaKnown RBP17.37■□□□□ 0.37
CLN3-217ENST00000565354 PCDHGC4Q9Y5F7 938 aa17.37■□□□□ 0.37
CLN3-217ENST00000565354 CFAP46Q8IYW2 2715 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 A0A1W2PQ67 120 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 USP27XA6NNY8 438 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 CEP104O60308 925 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 ZNF189O75820 626 aaPredicted RBP17.36■□□□□ 0.37
CLN3-217ENST00000565354 STK10O94804 968 aaKnown RBP17.36■□□□□ 0.37
CLN3-217ENST00000565354 CPP00450 1065 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 PTPN3P26045 913 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 MAT2AP31153 395 aaKnown RBP17.36■□□□□ 0.37
CLN3-217ENST00000565354 ABL2P42684 1182 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 CCR5P51681 352 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 ELP6Q0PNE2 266 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 CAMK2BQ13554 666 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 TEX44Q53QW1 395 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 LRRC73Q5JTD7 316 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 ARMC12Q5T9G4 340 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 NEK5Q6P3R8 708 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 ADAT2Q7Z6V5 191 aaKnown RBP17.36■□□□□ 0.37
CLN3-217ENST00000565354 SLC13A5Q86YT5 568 aaPredicted RBP17.36■□□□□ 0.37
CLN3-217ENST00000565354 NDUFAF2Q8N183 169 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 CXorf40AQ8TE69 158 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 MAIP1Q8WWC4 291 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 BIRC7Q96CA5 298 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 CRELD1Q96HD1 420 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 FEM1CQ96JP0 617 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 VAT1Q99536 393 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 ATP8A1Q9Y2Q0 1164 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.36■□□□□ 0.37
CLN3-217ENST00000565354 FADS3Q9Y5Q0 445 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 PTPRQQ9UMZ3 2332 aa17.36■□□□□ 0.37
CLN3-217ENST00000565354 ANKRD36A6QL64 1941 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 A0A1W2PQU0 124 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 GOLGA8CPA6NN73 597 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 KCNN4O15554 427 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 TSPAN6O43657 245 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 AP1G1O43747 822 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 TIMP2P16035 220 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 RBL1P28749 1068 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 CXCR5P32302 372 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 SUOXP51687 545 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 EPHB1P54762 984 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 TAS2R38P59533 333 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 PPP2CBP62714 309 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 PPP2CAP67775 309 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 UGP2Q16851 508 aa17.35■□□□□ 0.37
CLN3-217ENST00000565354 KIAA1161Q6NSJ0 714 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms