RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 DEFB133Q30KQ1 61 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 PROX2Q3B8N5 592 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 ANKRD20A8PQ5CZ79 823 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 FAXCQ5TGI0 409 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 MARC1Q5VT66 337 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 NCBP2-AS2Q69YL0 99 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 NYAP1Q6ZVC0 841 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 RD3Q7Z3Z2 195 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 GALNT15Q8N3T1 639 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 ZNF548Q8NEK5 533 aaPredicted RBP13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 OR4C6Q8NH72 309 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 PCDH19Q8TAB3 1148 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 FAM71BQ8TC56 605 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 GPR27Q9NS67 375 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 APOBEC3BQ9UH17 382 aaKnown RBP13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 TFR2Q9UP52 801 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 HYOU1Q9Y4L1 999 aa13.71□□□□□ -0.21
VPS9D1-204ENST00000565023 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 LRRD1A4D1F6 860 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 FAM221BA6H8Z2 402 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 NEMP2A6NFY4 417 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 CPP00450 1065 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 KRT7P08729 469 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 GIMD1P0DJR0 217 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 SUOXP51687 545 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 ARSEP51690 589 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 NSUN2Q08J23 767 aaKnown RBP eCLIP13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 TRAF2Q12933 501 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 RALGDSQ12967 914 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 ZNF211Q13398 564 aaPredicted RBP13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 ACOX1Q15067 660 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 PTPRRQ15256 657 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 FAM182AQ5T1J6 154 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 HES3Q5TGS1 186 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 ENPP7Q6UWV6 458 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 HID1Q8IV36 788 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 PHACTR4Q8IZ21 702 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 ACRBPQ8NEB7 543 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 HCAR2Q8TDS4 363 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 RAPGEF5Q92565 580 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 TSACCQ96A04 125 aaPredicted RBP13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 APOLD1Q96LR9 279 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 NUDCD1Q96RS6 583 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 NOD2Q9HC29 1040 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 RCOR3Q9P2K3 495 aaPredicted RBP13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 B4GALT6Q9UBX8 382 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 PNMA8BQ9ULN7 279 aaPredicted RBP13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 OR1A2Q9Y585 309 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 PCDHGA1Q9Y5H4 931 aa13.7□□□□□ -0.22
VPS9D1-204ENST00000565023 AKAP13Q12802 2813 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 LRP4O75096 1905 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 TMEM8BA6NDV4 472 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 TRABD2BA6NFA1 517 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 BTNL10A8MVZ5 291 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 K7ESM1 405 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 TRAFD1O14545 582 aaPredicted RBP13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 PJA2O43164 708 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 AQP9O43315 295 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 RECQL5O94762 991 aaPredicted RBP13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 KRT1P04264 644 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 CTPS1P17812 591 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 KDELR1P24390 212 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 HSPA9P38646 679 aaKnown RBP13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 GARSP41250 739 aaKnown RBP13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 SLC1A1P43005 524 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 NOP2P46087 812 aaKnown RBP13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 VAV2P52735 878 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 POLR2LP62875 67 aaKnown RBP13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 PPARDQ03181 441 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 GBE1Q04446 702 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 INPP5AQ14642 412 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 PAFAH1B3Q15102 231 aaKnown RBP13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 PDK2Q15119 407 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 SMAD1Q15797 465 aaKnown RBP13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 PRRT3Q5FWE3 981 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 LIPIQ6XZB0 460 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 MACC1Q6ZN28 852 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 DPPA4Q7L190 304 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 MAP7D3Q8IWC1 876 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 KDF1Q8NAX2 398 aaPredicted RBP13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 PLA2G15Q8NCC3 412 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 CCNYQ8ND76 341 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 ECHDC3Q96DC8 303 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 IFT43Q96FT9 208 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 IL12RB2Q99665 862 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 SEMA3CQ99985 751 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 MGME1Q9BQP7 344 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 ZNF670Q9BS34 389 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 APOOQ9BUR5 198 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 SLC13A1Q9BZW2 595 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 CCDC86Q9H6F5 360 aaKnown RBP13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 SUDS3Q9H7L9 328 aaPredicted RBP13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 NLGN3Q9NZ94 848 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 SPASTQ9UBP0 616 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 MOSPD1Q9UJG1 213 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 SALL4Q9UJQ4 1053 aa13.69□□□□□ -0.22
VPS9D1-204ENST00000565023 KNTC1P50748 2209 aa13.68□□□□□ -0.22
VPS9D1-204ENST00000565023 A0A0U1RQS6 177 aa13.68□□□□□ -0.22
VPS9D1-204ENST00000565023 CPED1A4D0V7 1026 aa13.68□□□□□ -0.22
VPS9D1-204ENST00000565023 GOLGA6CA6NDK9 693 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms