RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SLC10A7Q0GE19 358 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 PIGHQ14442 188 aaPredicted RBP17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 LBRQ14739 615 aaKnown RBP17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 PERM1Q5SV97 790 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 ESRP1Q6NXG1 681 aaKnown RBP17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 CAVIN1Q6NZI2 390 aaKnown RBP17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 LIPIQ6XZB0 460 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 RBM44Q6ZP01 1051 aaKnown RBP17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 DPPA4Q7L190 304 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 POLNQ7Z5Q5 900 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 TP53INP2Q8IXH6 220 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 ZNF248Q8NDW4 579 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 TEKT4Q8WW24 435 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 SCG3Q8WXD2 468 aaKnown RBP17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 NSMCE3Q96MG7 304 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 WDR92Q96MX6 357 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 UBL7Q96S82 380 aaPredicted RBP17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 ASCL3Q9NQ33 180 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 PADI4Q9UM07 663 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 ENTPD2Q9Y5L3 495 aa17.31■□□□□ 0.36
VPS9D1-203ENST00000563798 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 NTN3O00634 580 aaPredicted RBP17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 RECQL5O94762 991 aaPredicted RBP17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 SERPINC1P01008 464 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 CELA2BP08218 269 aaPredicted RBP17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 GM2AP17900 193 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 ARL4AP40617 200 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 PCBP4P57723 403 aaKnown RBP17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 KIAA1024LP59773 190 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 RALGPS1Q5JS13 557 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 ENPP7Q6UWV6 458 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 HID1Q8IV36 788 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 SPACA3Q8IXA5 215 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 ARL10Q8N8L6 244 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 TSACCQ96A04 125 aaPredicted RBP17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 IQCDQ96DY2 449 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 RBM15Q96T37 977 aaKnown RBP eCLIP17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 MYO1AQ9UBC5 1043 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 OR1A2Q9Y585 309 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 PCDHGA8Q9Y5G5 932 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 RAI2Q9Y5P3 530 aa17.3■□□□□ 0.36
VPS9D1-203ENST00000563798 PTPRQQ9UMZ3 2332 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 A0A1W2PNU3 283 aaPredicted RBP17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 TNFRSF10CO14798 259 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 SOCS5O75159 536 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 RARAP10276 462 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 CTSEP14091 401 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 TCF4P15884 667 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 AMPD1P23109 780 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 MLLT3P42568 568 aaPredicted RBP17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 SCNN1BP51168 640 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 SKOR1P84550 965 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 TMCO3Q6UWJ1 677 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 GKN2Q86XP6 184 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 CBARPQ8N350 705 aaPredicted RBP17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 PLA2G15Q8NCC3 412 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 LSM14AQ8ND56 463 aaKnown RBP17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 OR6C4Q8NGE1 309 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 FAM71BQ8TC56 605 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 FUBP1Q96AE4 644 aaKnown RBP17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 PRR11Q96HE9 360 aaPredicted RBP17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 SLC46A1Q96NT5 459 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 CSPG4P5Q96PW8 444 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 NUDCD1Q96RS6 583 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 CCDC3Q9BQI4 270 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 ETNK2Q9NVF9 386 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 KCTD5Q9NXV2 234 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 KLQ9UEF7 1012 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 SSUH2Q9Y2M2 353 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 LRP4O75096 1905 aa17.29■□□□□ 0.36
VPS9D1-203ENST00000563798 BPTFQ12830 3046 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 TK2O00142 265 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 MAFKO60675 156 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 TNFP01375 233 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 PRKCGP05129 697 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 PCCBP05166 539 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 CYP1A2P05177 515 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 ELFN1P0C7U0 828 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 KELP23276 732 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 PDX1P52945 283 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 SLC25A11Q02978 314 aaKnown RBP17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 OGFOD3Q6PK18 319 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 LRRC49Q8IUZ0 686 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 PGBD5Q8N414 524 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 PCDH19Q8TAB3 1148 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 ATXN7L3BQ96GX2 97 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 COQ10AQ96MF6 247 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 MGME1Q9BQP7 344 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 CBX8Q9HC52 389 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 PCDH18Q9HCL0 1135 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 THSD1Q9NS62 852 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 RCOR3Q9P2K3 495 aaPredicted RBP17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 IP6K2Q9UHH9 426 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 CAPN11Q9UMQ6 739 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 DOLKQ9UPQ8 538 aa17.28■□□□□ 0.36
VPS9D1-203ENST00000563798 CACNB4O00305 520 aaPredicted RBP17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 SERPING1P05155 500 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 ZBED6P86452 979 aa17.27■□□□□ 0.36
VPS9D1-203ENST00000563798 FANCCQ00597 558 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms