RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 TC2NQ8N9U0 490 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 NHLRC2Q8NBF2 726 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 MNS1Q8NEH6 495 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 RASSF8Q8NHQ8 419 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 MAFAQ8NHW3 353 aaPredicted RBP5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 MDM1Q8TC05 714 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 AGR3Q8TD06 166 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 LPIN2Q92539 896 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 CASP10Q92851 521 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 GIMAP5Q96F15 307 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 CFAP36Q96G28 342 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 PGAM5Q96HS1 289 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 REXO5Q96IC2 774 aaKnown RBP5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 GAL3ST4Q96RP7 486 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 PAIP2Q9BPZ3 127 aaKnown RBP5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 SLC25A23Q9BV35 468 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 KRTAP4-8Q9BYQ9 185 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 EPB41L4BQ9H329 900 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 NRDE2Q9H7Z3 1164 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 USP29Q9HBJ7 922 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 GPR108Q9NPR9 543 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 RLIMQ9NVW2 624 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 HSPB7Q9UBY9 170 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 AMACRQ9UHK6 382 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 VPS51Q9UID3 782 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 CD207Q9UJ71 328 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 SUFUQ9UMX1 484 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 USP22Q9UPT9 525 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 SNX9Q9Y5X1 595 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 TOGARAM1Q9Y4F4 1720 aa5.31□□□□□ -1.56
VPS35P1-201ENST00000563400 VIRMAQ69YN4 1812 aaKnown RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 CTAGE15A4D2H0 777 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 ZNF839A8K0R7 811 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 PER2O15055 1255 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 DCLK1O15075 740 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 PPIP5K2O43314 1243 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 PAGE4O60829 102 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 AKAP3O75969 853 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 AKR7A3O95154 331 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 PDGFBP01127 241 aaPredicted RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 CTAGE8P0CG41 777 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 UROSP10746 265 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 ARF4P18085 180 aaPredicted RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 SDHBP21912 280 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 CRHR1P34998 444 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 CPOXP36551 454 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 CORO7P57737 925 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 KIAA1024LP59773 190 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 ASIC1P78348 528 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 GSTO1P78417 241 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 PMP22Q01453 160 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 ZP2Q05996 745 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 DUSP8Q13202 625 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 CHIT1Q13231 466 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 SNX1Q13596 522 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 MXD4Q14582 209 aaPredicted RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 TBRG1Q3YBR2 411 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 RBM20Q5T481 1227 aaKnown RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 ANKRD40Q6AI12 368 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 CENPPQ6IPU0 288 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 MOXD1Q6UVY6 613 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 G2E3Q7L622 706 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 ATG4DQ86TL0 474 aaPredicted RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 TLK2Q86UE8 772 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 CTAGE6Q86UF2 777 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 PDSS2Q86YH6 399 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 DCP2Q8IU60 420 aaKnown RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 DHX40Q8IX18 779 aaKnown RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 CTAGE4Q8IX94 777 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 MMP21Q8N119 569 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 LRRC43Q8N309 656 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 FSTL5Q8N475 847 aaPredicted RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 TMIEQ8NEW7 156 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 SMARCC2Q8TAQ2 1214 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 TEKT4Q8WW24 435 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 CCDC120Q96HB5 630 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 ZBTB45Q96K62 511 aaPredicted RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 ADAD1Q96M93 576 aaKnown RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 WDR92Q96MX6 357 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 ZNF830Q96NB3 372 aaPredicted RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 PRRX2Q99811 253 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 NUDT22Q9BRQ3 303 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 G6PC3Q9BUM1 346 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 NUP85Q9BW27 656 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 NACAP1Q9BZK3 213 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 DENND2DQ9H6A0 471 aaPredicted RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 COQ10BQ9H8M1 238 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 C17orf75Q9HAS0 396 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 PALMDQ9NP74 551 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 GLRX2Q9NS18 164 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 TNFRSF10DQ9UBN6 386 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 DNAJB11Q9UBS4 358 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 CDH22Q9UJ99 828 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 NFU1Q9UMS0 254 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 COL5A3P25940 1745 aaPredicted RBP5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 NUP188Q5SRE5 1749 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 ADCY9O60503 1353 aa5.3□□□□□ -1.56
VPS35P1-201ENST00000563400 ZNF804BA4D1E1 1349 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 UBN2Q6ZU65 1347 aa5.29□□□□□ -1.56
VPS35P1-201ENST00000563400 PITPNM2Q9BZ72 1349 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms