RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SLC36A4Q6YBV0 504 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 LPCAT2Q7L5N7 544 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 TBC1D3Q8IZP1 549 aaPredicted RBP9.84□□□□□ -0.83
CLK3-208ENST00000562626 PELI3Q8N2H9 469 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 LPCAT1Q8NF37 534 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 IPMKQ8NFU5 416 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 SPOCK2Q92563 424 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 MAGOHBQ96A72 148 aaKnown RBP9.84□□□□□ -0.83
CLK3-208ENST00000562626 EID2BQ96D98 161 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 MCCC1Q96RQ3 725 aaPredicted RBP9.84□□□□□ -0.83
CLK3-208ENST00000562626 VAT1Q99536 393 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 MYOCQ99972 504 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 APOL2Q9BQE5 337 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 DYRK4Q9NR20 520 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 TRHDEQ9UKU6 1024 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 DRG1Q9Y295 367 aaKnown RBP9.84□□□□□ -0.83
CLK3-208ENST00000562626 CABIN1Q9Y6J0 2220 aa9.84□□□□□ -0.83
CLK3-208ENST00000562626 EP300Q09472 2414 aaPredicted RBP9.83□□□□□ -0.84
CLK3-208ENST00000562626 A0A0J9YYE9 177 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 LOC285095A0A1B0GVY8 99 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 CFAP69A5D8W1 941 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 LRRC72A6NJI9 287 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 PROB1E7EW31 1015 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 AURKAO14965 403 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 OPHN1O60890 802 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 PCDH8O95206 1070 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 EPN2O95208 641 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 AGTP01019 485 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 TRBC1P01850 177 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 WNT1P04628 370 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 C1SP09871 688 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 CES1P23141 567 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 GRIA1P42261 906 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 MAPK8P45983 427 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 LIG3P49916 1009 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 FAM193AP78312 1265 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 MRPS25P82663 173 aaKnown RBP9.83□□□□□ -0.84
CLK3-208ENST00000562626 BNC1Q01954 994 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 MSLNQ13421 630 aaPredicted RBP9.83□□□□□ -0.84
CLK3-208ENST00000562626 SLC14A2Q15849 920 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 CNGA3Q16281 694 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 P3H1Q32P28 736 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 SIRPB2Q5JXA9 342 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 TCEAL6Q6IPX3 200 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 DENND5AQ6IQ26 1287 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 CCDC137Q6PK04 289 aaKnown RBP9.83□□□□□ -0.84
CLK3-208ENST00000562626 LIPIQ6XZB0 460 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 DPPA4Q7L190 304 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 HSD11B1LQ7Z5J1 315 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 TRIM69Q86WT6 500 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 HORMAD1Q86X24 394 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 ZCCHC9Q8N567 271 aaKnown RBP9.83□□□□□ -0.84
CLK3-208ENST00000562626 SLC25A41Q8N5S1 370 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 CADM4Q8NFZ8 388 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 HCAR2Q8TDS4 363 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 DNASE2BQ8WZ79 361 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 SNX19Q92543 992 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 TCEAL3Q969E4 200 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 SLC6A18Q96N87 628 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 KLF6Q99612 283 aaPredicted RBP9.83□□□□□ -0.84
CLK3-208ENST00000562626 FICDQ9BVA6 458 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 FRMD8P1Q9BZ68 369 aaPredicted RBP9.83□□□□□ -0.84
CLK3-208ENST00000562626 ARRDC1-AS1Q9H2J1 176 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 ETNK1Q9HBU6 452 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 PREBQ9HCU5 417 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 PARD6AQ9NPB6 346 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 PIH1D1Q9NWS0 290 aaKnown RBP9.83□□□□□ -0.84
CLK3-208ENST00000562626 FAM153AQ9UHL3 310 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 PILRBQ9UKJ0 227 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 PHTF1Q9UMS5 762 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 PPIL1Q9Y3C6 166 aa9.83□□□□□ -0.84
CLK3-208ENST00000562626 ZFHX2Q9C0A1 2572 aaPredicted RBP9.83□□□□□ -0.84
CLK3-208ENST00000562626 DNAH14Q0VDD8 3507 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 TCRBV7S3A2A0A539 114 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 CAPN8A6NHC0 703 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 MEI4A8MW99 385 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 ANKRD66B4E2M5 251 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 H0Y8X5 98 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 SLC31A1O15431 190 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 HEXIM1O94992 359 aaKnown RBP9.82□□□□□ -0.84
CLK3-208ENST00000562626 CLDN7O95471 211 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 NDST3O95803 873 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 C6P13671 934 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 TGM1P22735 817 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 VPS41P49754 854 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 CCR5P51681 352 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 TERF1P54274 439 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 CLDN2P57739 230 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 CREB5Q02930 508 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 CDK18Q07002 472 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 C2orf54Q08AI8 447 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 ELF2Q15723 593 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 TPRG1LQ5T0D9 272 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 CFAP58Q5T655 872 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 PEAR1Q5VY43 1037 aaPredicted RBP9.82□□□□□ -0.84
CLK3-208ENST00000562626 LYSMD4Q5XG99 296 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 LRRC66Q68CR7 880 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 ITPRIPL1Q6GPH6 555 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 LAIR1Q6GTX8 287 aa9.82□□□□□ -0.84
CLK3-208ENST00000562626 CRTC1Q6UUV9 634 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms