RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CENPTQ96BT3 561 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 ALKBH8Q96BT7 664 aaKnown RBP21.37■■□□□ 1.01
CLN3-209ENST00000561689 TBATAQ96M53 351 aa21.37■■□□□ 1.01
CLN3-209ENST00000561689 PAIP2Q9BPZ3 127 aaKnown RBP21.37■■□□□ 1.01
CLN3-209ENST00000561689 OR51F1A6NGY5 319 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 CRTAMO95727 393 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 AHSGP02765 367 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 LAMP2P13473 410 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 GABRB3P28472 473 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 LIMK2P53671 638 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 CARD16Q5EG05 197 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 FSTL4Q6MZW2 842 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 PARM1Q6UWI2 310 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 TIFABQ6ZNK6 161 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 MFSD6LQ8IWD5 586 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 PCDH20Q8N6Y1 951 aaKnown RBP21.36■■□□□ 1.01
CLN3-209ENST00000561689 PNPLA1Q8N8W4 532 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 DENND1AQ8TEH3 1009 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 DYDC1Q8WWB3 177 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 PIH1D2Q8WWB5 315 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 VOPP1Q96AW1 172 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 MRGPRX3Q96LB0 322 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 RIPOR3Q96MK2 946 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 SLC13A1Q9BZW2 595 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 CEP44Q9C0F1 390 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 POMKQ9H5K3 350 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 MTO1Q9Y2Z2 717 aaKnown RBP21.36■■□□□ 1.01
CLN3-209ENST00000561689 TPP1O14773 563 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 IGFBP4P22692 258 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 CCNHP51946 323 aaPredicted RBP21.36■■□□□ 1.01
CLN3-209ENST00000561689 SEC24CP53992 1094 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 WDR4P57081 412 aaKnown RBP21.36■■□□□ 1.01
CLN3-209ENST00000561689 FCHO2Q0JRZ9 810 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 TAF1AQ15573 450 aaPredicted RBP21.36■■□□□ 1.01
CLN3-209ENST00000561689 MICALL1Q8N3F8 863 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 DCLK2Q8N568 766 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 TCP10LQ8TDR4 215 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 FGF14Q92915 247 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 FAM167BQ9BTA0 163 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 MCMBPQ9BTE3 642 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 PCMTD2Q9NV79 361 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 NSMCE4AQ9NXX6 385 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 GTSE1Q9NYZ3 720 aa21.36■■□□□ 1.01
CLN3-209ENST00000561689 TTC34A8MYJ7 566 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 SLC7A4O43246 635 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 HTRA2O43464 458 aaPredicted RBP21.35■■□□□ 1.01
CLN3-209ENST00000561689 GSRP00390 522 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 ALPIP09923 528 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 NAIF1Q69YI7 327 aaPredicted RBP21.35■■□□□ 1.01
CLN3-209ENST00000561689 YAF2Q8IY57 180 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 OTUD6BQ8N6M0 293 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 ACVR1CQ8NER5 493 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 OR4K2Q8NGD2 314 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 STYXQ8WUJ0 223 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 NXPE3Q969Y0 559 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 APOPT1Q96IL0 206 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 RPP25Q9BUL9 199 aaKnown RBP21.35■■□□□ 1.01
CLN3-209ENST00000561689 ZDHHC6Q9H6R6 413 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 SLC17A7Q9P2U7 560 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 DEC1Q9P2X7 70 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 SLC27A6Q9Y2P4 619 aa21.35■■□□□ 1.01
CLN3-209ENST00000561689 C2orf81A6NN90 581 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 SOCS5O75159 536 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 SIN3BO75182 1162 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 SERPINA4P29622 427 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 GRIA4P48058 902 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 ZNF140P52738 457 aaPredicted RBP21.34■■□□□ 1.01
CLN3-209ENST00000561689 SLC18A1P54219 525 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 CSE1LP55060 971 aaKnown RBP21.34■■□□□ 1.01
CLN3-209ENST00000561689 HNRNPH2P55795 449 aaKnown RBP21.34■■□□□ 1.01
CLN3-209ENST00000561689 ACVR1Q04771 509 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 KDSRQ06136 332 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 PTPRNQ16849 979 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 CDHR3Q6ZTQ4 885 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 ZC3HC1Q86WB0 502 aaKnown RBP21.34■■□□□ 1.01
CLN3-209ENST00000561689 NDUFAF2Q8N183 169 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 CHST14Q8NCH0 376 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 C2CD4AQ8NCU7 369 aaPredicted RBP21.34■■□□□ 1.01
CLN3-209ENST00000561689 E2F7Q96AV8 911 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 VPS39Q96JC1 886 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 MFSD1Q9H3U5 465 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 CAB39LQ9H9S4 337 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 FBXO5Q9UKT4 447 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 CCDC162PA2VCL2 907 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 COPEO14579 308 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 RPP40O75818 363 aaKnown RBP21.34■■□□□ 1.01
CLN3-209ENST00000561689 ATP5BP06576 529 aaKnown RBP21.34■■□□□ 1.01
CLN3-209ENST00000561689 DLDP09622 509 aaKnown RBP21.34■■□□□ 1.01
CLN3-209ENST00000561689 DNAJC3Q13217 504 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 LRIT3Q3SXY7 679 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 CMC1Q7Z7K0 106 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 LDB1Q86U70 411 aaPredicted RBP21.34■■□□□ 1.01
CLN3-209ENST00000561689 ZSWIM9Q86XI8 627 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 OR2A12Q8NGT7 310 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 WFIKKN2Q8TEU8 576 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 FRS2Q8WU20 508 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 PEX13Q92968 403 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 SGSM3Q96HU1 749 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 MSLNLQ96KJ4 702 aa21.34■■□□□ 1.01
CLN3-209ENST00000561689 MTG2Q9H4K7 406 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms