RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 PCDH12Q9NPG4 1184 aa17.93■□□□□ 0.46
TSPAN3-208ENST00000560514 MRPL40Q9NQ50 206 aaKnown RBP17.93■□□□□ 0.46
TSPAN3-208ENST00000560514 MFHAS1Q9Y4C4 1052 aa17.93■□□□□ 0.46
TSPAN3-208ENST00000560514 USP9YO00507 2555 aaPredicted RBP17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 TNFRSF10CO14798 259 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 B4GAT1O43505 415 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 RAD1O60671 282 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 PIGNO95427 931 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 GABRB2P47870 512 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 LIG3P49916 1009 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 KIAA1024LP59773 190 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 ATP11AP98196 1134 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 PAK1Q13153 545 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 TRA2AQ13595 282 aaKnown RBP eCLIP17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 SEPT6Q14141 434 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 GRM3Q14832 879 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 UGP2Q16851 508 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 INO80DQ53TQ3 878 aaPredicted RBP17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 ARTNQ5T4W7 220 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 XYLT1Q86Y38 959 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 SFTPA2Q8IWL1 248 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 PAF1Q8N7H5 531 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 ART4Q93070 314 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 TBC1D31Q96DN5 1066 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 NUDT22Q9BRQ3 303 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 EFHD1Q9BUP0 239 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 DDA1Q9BW61 102 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 GPN2Q9H9Y4 310 aaPredicted RBP17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 FGF22Q9HCT0 170 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 SLC39A1Q9NY26 324 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 PLAAQ9Y263 795 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 B3GALT1Q9Y5Z6 326 aa17.92■□□□□ 0.46
TSPAN3-208ENST00000560514 SPTBN1Q01082 2364 aaKnown RBP17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 NOTCH2Q04721 2471 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 IGHV5-10-1A0A0J9YXX1 117 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 TMEM202A6NGA9 273 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 PPP1R3GB7ZBB8 358 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 PRKAR1AP10644 381 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 PPM1FP49593 454 aaPredicted RBP17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 MAZP56270 477 aaKnown RBP17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 NRG1Q02297 640 aaPredicted RBP17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 APBA1Q02410 837 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 AGERQ15109 404 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 CDO1Q16878 200 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 LACTB2Q53H82 288 aaPredicted RBP17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 DCAF12Q5T6F0 453 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 SMYD5Q6GMV2 418 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 NLRP14Q86W24 1093 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 FAM129CQ86XR2 697 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 NRSN1Q8IZ57 195 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 ZDHHC1Q8WTX9 485 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 FUBP1Q96AE4 644 aaKnown RBP17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 VOPP1Q96AW1 172 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 SUV39H2Q9H5I1 410 aa17.91■□□□□ 0.46
TSPAN3-208ENST00000560514 MYO9AB2RTY4 2548 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 FAM170AA1A519 330 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 PDE2AO00408 941 aaPredicted RBP17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 FOXN3O00409 490 aaPredicted RBP17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 INSIG1O15503 277 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 ADRA1BP35368 520 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 CLCN1P35523 988 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 LIMK2P53671 638 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 RAB15P59190 212 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 KCTD16Q68DU8 428 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 BRAT1Q6PJG6 821 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 DNAAF5Q86Y56 855 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 NETO2Q8NC67 525 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 PLA2G15Q8NCC3 412 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 CCL4L1Q8NHW4 92 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 APOBEC4Q8WW27 367 aaKnown RBP17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 ABHD17AQ96GS6 310 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 SLC45A3Q96JT2 553 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 EXOC2Q96KP1 924 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 GSDMCQ9BYG8 508 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 SUDS3Q9H7L9 328 aaPredicted RBP17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 DNAJC12Q9UKB3 198 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 ATP8A1Q9Y2Q0 1164 aa17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 USP9XQ93008 2570 aaPredicted RBP17.9■□□□□ 0.46
TSPAN3-208ENST00000560514 ENO4A6NNW6 628 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 NKX2-8O15522 239 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 LRIG2O94898 1065 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 CDH5P33151 784 aaPredicted RBP17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 NOP2P46087 812 aaKnown RBP17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 GPR3P46089 330 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 ARSDP51689 593 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 ILF3Q12906 894 aaKnown RBP eCLIP17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 KLRB1Q12918 225 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 PEX6Q13608 980 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 MANEALQ5VSG8 457 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 BNIPLQ7Z465 357 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 OR4D9Q8NGE8 314 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 PMEPA1Q969W9 287 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 ZNF641Q96N77 438 aaPredicted RBP17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 DPYSL5Q9BPU6 564 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 WDR26Q9H7D7 661 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 TMEM59LQ9UK28 342 aa17.89■□□□□ 0.45
TSPAN3-208ENST00000560514 ICE1Q9Y2F5 2266 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 PRSS38A1L453 326 aa17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 GTPBP10A4D1E9 387 aaKnown RBP17.88■□□□□ 0.45
TSPAN3-208ENST00000560514 CFAP69A5D8W1 941 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms