RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 C21orf59P57076 290 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 IRX4P78413 519 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 CDK18Q07002 472 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 RALGDSQ12967 914 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 GRIK2Q13002 908 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 MPP3Q13368 585 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 STAT4Q14765 748 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 TCEAL6Q6IPX3 200 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 DRICH1Q6PGQ1 229 aaPredicted RBP13.06□□□□□ -0.32
NEDD8-208ENST00000560427 KYAT3Q6YP21 454 aaKnown RBP13.06□□□□□ -0.32
NEDD8-208ENST00000560427 B4GALNT4Q76KP1 1039 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 PID1Q7Z2X4 250 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 ABI3BPQ7Z7G0 1075 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 KIAA2013Q8IYS2 634 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 SLC35F6Q8N357 371 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 TCEAL3Q969E4 200 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 RTP4Q96DX8 246 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 RBM15Q96T37 977 aaKnown RBP eCLIP13.06□□□□□ -0.328e-6■□□□□ 8.4
NEDD8-208ENST00000560427 NAP1L3Q99457 506 aaPredicted RBP13.06□□□□□ -0.32
NEDD8-208ENST00000560427 EDEM2Q9BV94 578 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 SMOC1Q9H4F8 434 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 B4GALT6Q9UBX8 382 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 FAM153AQ9UHL3 310 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 RSPH14Q9UHP6 348 aa13.06□□□□□ -0.32
NEDD8-208ENST00000560427 TTC7AQ9ULT0 858 aaPredicted RBP13.06□□□□□ -0.32
NEDD8-208ENST00000560427 PCDH15Q96QU1 1955 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 TCRBV7S2A1N4TA0A589 114 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 USP27XA6NNY8 438 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 A6NNZ2 444 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 ENC1O14682 589 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 FPGTO14772 594 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 SLC31A1O15431 190 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 LIASO43766 372 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 CEP104O60308 925 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 DFNA5O60443 496 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 MMP20O60882 483 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 HEXIM1O94992 359 aaKnown RBP13.05□□□□□ -0.32
NEDD8-208ENST00000560427 CER1O95813 267 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 PRLP01236 227 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 FGGP02679 453 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 PDHA1P08559 390 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 PRLRP16471 622 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 NFKB1P19838 968 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 LIG3P49916 1009 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 ARHGEF7Q14155 803 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 FGL2Q14314 439 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 PRPSAP1Q14558 356 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 IHHQ14623 411 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 CCNG2Q16589 344 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 P3H1Q32P28 736 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 ANKRD20A2Q5SQ80 823 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 ANKRD20A1Q5TYW2 823 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 ANKRD20A3Q5VUR7 823 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 DCP2Q8IU60 420 aaKnown RBP13.05□□□□□ -0.32
NEDD8-208ENST00000560427 RASGEF1CQ8N431 466 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 OXR1Q8N573 874 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.05□□□□□ -0.32
NEDD8-208ENST00000560427 LPCAT1Q8NF37 534 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 LRRC45Q96CN5 670 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 IFT43Q96FT9 208 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 TRIB3Q96RU7 358 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 KLF6Q99612 283 aaPredicted RBP13.05□□□□□ -0.32
NEDD8-208ENST00000560427 WRAP53Q9BUR4 548 aaKnown RBP13.05□□□□□ -0.32
NEDD8-208ENST00000560427 ERVMER34-1Q9H9K5 563 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 USP29Q9HBJ7 922 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 TMEM9BQ9NQ34 198 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 CHKBQ9Y259 395 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 ANKRD6Q9Y2G4 727 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 R3HDM2Q9Y2K5 976 aaKnown RBP13.05□□□□□ -0.32
NEDD8-208ENST00000560427 AAR2Q9Y312 384 aaKnown RBP13.05□□□□□ -0.32
NEDD8-208ENST00000560427 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.05□□□□□ -0.32
NEDD8-208ENST00000560427 SLCO1B1Q9Y6L6 691 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 ANKRD36A6QL64 1941 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 SDK1Q7Z5N4 2213 aa13.05□□□□□ -0.32
NEDD8-208ENST00000560427 ZNF292O60281 2723 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 CACNA1EQ15878 2313 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 A0A1B0GVT2 93 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 GOLGA6CA6NDK9 693 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 GOLGA6BA6NDN3 693 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 NPIPB15A6NHN6 443 aaPredicted RBP13.04□□□□□ -0.32
NEDD8-208ENST00000560427 ANKRD66B4E2M5 251 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 YKT6O15498 198 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 LZTS3O60299 673 aaPredicted RBP13.04□□□□□ -0.32
NEDD8-208ENST00000560427 GCATO75600 419 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 NDST3O95803 873 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 PAK4O96013 591 aaPredicted RBP13.04□□□□□ -0.32
NEDD8-208ENST00000560427 MT-CYBP00156 380 aaPredicted RBP13.04□□□□□ -0.32
NEDD8-208ENST00000560427 ATP1A1P05023 1023 aaKnown RBP13.04□□□□□ -0.32
NEDD8-208ENST00000560427 PRKCGP05129 697 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 GOLGA6DP0CG33 693 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 TCP1P17987 556 aaKnown RBP13.04□□□□□ -0.32
NEDD8-208ENST00000560427 CTSKP43235 329 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 RABIFP47224 123 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 CSNK1EP49674 416 aaKnown RBP13.04□□□□□ -0.32
NEDD8-208ENST00000560427 GEMP55040 296 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 NXPH1P58417 271 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 SIX1Q15475 284 aaPredicted RBP13.04□□□□□ -0.32
NEDD8-208ENST00000560427 OASLQ15646 514 aaKnown RBP13.04□□□□□ -0.32
NEDD8-208ENST00000560427 CNGA3Q16281 694 aa13.04□□□□□ -0.32
NEDD8-208ENST00000560427 QPCTQ16769 361 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms