RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 DEKP35659 375 aaKnown RBP10.12□□□□□ -0.79
USP3-216ENST00000559873 KCNJ1P48048 391 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 TAS2R38P59533 333 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 BASP1P80723 227 aaKnown RBP10.12□□□□□ -0.79
USP3-216ENST00000559873 DR1Q01658 176 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 SGCGQ13326 291 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 SEMA5AQ13591 1074 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 GALNT3Q14435 633 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 TMEM52BQ4KMG9 183 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 LRRC73Q5JTD7 316 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 DNTTIP2Q5QJE6 756 aaKnown RBP10.12□□□□□ -0.79
USP3-216ENST00000559873 TTC27Q6P3X3 843 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 ZSWIM9Q86XI8 627 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 KLHL7Q8IXQ5 586 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 RAVER1Q8IY67 606 aaKnown RBP10.12□□□□□ -0.79
USP3-216ENST00000559873 TMEFF1Q8IYR6 380 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 RGL4Q8IZJ4 473 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 FRMD1Q8N878 549 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 DENND6BQ8NEG7 585 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 PIH1D2Q8WWB5 315 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 SLCO2A1Q92959 643 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 MRGPRX2Q96LB1 330 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 TRIB3Q96RU7 358 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 LYSMD1Q96S90 227 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 TBL1YQ9BQ87 522 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 MLPHQ9BV36 600 aaPredicted RBP10.12□□□□□ -0.79
USP3-216ENST00000559873 FICDQ9BVA6 458 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 TRABDQ9H4I3 376 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 EIF2B3Q9NR50 452 aaKnown RBP10.12□□□□□ -0.79
USP3-216ENST00000559873 UBP1Q9NZI7 540 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 PCYOX1Q9UHG3 505 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.12□□□□□ -0.79
USP3-216ENST00000559873 PPIL1Q9Y3C6 166 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 PCDHGA5Q9Y5G8 931 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 FANCMQ8IYD8 2048 aa10.12□□□□□ -0.79
USP3-216ENST00000559873 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.11□□□□□ -0.79
USP3-216ENST00000559873 LOC285095A0A1B0GVY8 99 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 A0A1W2PPC4 97 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 PRR5-ARHGAP8B1AHC4 643 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 ESPNB1AK53 854 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 LATO43561 262 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 EPN2O95208 641 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 LMNAP02545 664 aaKnown RBP10.11□□□□□ -0.79
USP3-216ENST00000559873 PDHA1P08559 390 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 CTPS1P17812 591 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 CD27P26842 260 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 AKT2P31751 481 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 RPL22P35268 128 aaKnown RBP10.11□□□□□ -0.79
USP3-216ENST00000559873 VPS41P49754 854 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 PPP2CBP62714 309 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 PPP2CAP67775 309 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 SARNPP82979 210 aaKnown RBP10.11□□□□□ -0.79
USP3-216ENST00000559873 CDK16Q00536 496 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 GPS1Q13098 491 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 PTK6Q13882 451 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 SLC1A5Q15758 541 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 QPCTQ16769 361 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 TMEM259Q4ZIN3 620 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 FAXCQ5TGI0 409 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 PPP1R21Q6ZMI0 780 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 ARMCX6Q7L4S7 300 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 ZNF572Q7Z3I7 529 aaPredicted RBP10.11□□□□□ -0.79
USP3-216ENST00000559873 SYT12Q8IV01 421 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 KLHDC8BQ8IXV7 354 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 SPATA4Q8NEY3 305 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 FAM174AQ8TBP5 190 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 ASB12Q8WXK4 309 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 SKA1Q96BD8 255 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 BIRC7Q96CA5 298 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 NSMCE3Q96MG7 304 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 WRAP53Q9BUR4 548 aaKnown RBP10.11□□□□□ -0.79
USP3-216ENST00000559873 RAD18Q9NS91 495 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 FAM86C1Q9NVL1 165 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 PKD2L2Q9NZM6 624 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 ASIC3Q9UHC3 531 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 ITM2BQ9Y287 266 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 MRFAP1Q9Y605 127 aa10.11□□□□□ -0.79
USP3-216ENST00000559873 NUMA1Q14980 2115 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 GPR179Q6PRD1 2367 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 EML5Q05BV3 1969 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 C1orf232A0A0U1RR37 186 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 CTAGE15A4D2H0 777 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 NPIPB15A6NHN6 443 aaPredicted RBP10.1□□□□□ -0.79
USP3-216ENST00000559873 PRAMEF26H0Y7S4 382 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 PDE2AO00408 941 aaPredicted RBP10.1□□□□□ -0.79
USP3-216ENST00000559873 SPINT1O43278 529 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 ZNF500O60304 480 aaPredicted RBP10.1□□□□□ -0.79
USP3-216ENST00000559873 MAGEC1O60732 1142 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 HEXIM1O94992 359 aaKnown RBP10.1□□□□□ -0.79
USP3-216ENST00000559873 PRLP01236 227 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 PRKCGP05129 697 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 IGHV4-34P06331 123 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 PYGLP06737 847 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 APRTP07741 180 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 RETP07949 1114 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 ALPIP09923 528 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 ATXN1LP0C7T5 689 aaKnown RBP10.1□□□□□ -0.79
USP3-216ENST00000559873 CTAGE8P0CG41 777 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 C6P13671 934 aa10.1□□□□□ -0.79
USP3-216ENST00000559873 ETS1P14921 441 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms