RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 SGF29Q96ES7 293 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 EXOC2Q96KP1 924 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 PCDHB18PQ96TA0 734 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 EIF3CQ99613 913 aaKnown RBP9.23□□□□□ -0.93
HDDC3-204ENST00000559834 FOXP3Q9BZS1 431 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 FAM117AQ9C073 453 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 DPEP2Q9H4A9 486 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 ATP13A3Q9H7F0 1226 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 SEPT11Q9NVA2 429 aaKnown RBP9.23□□□□□ -0.93
HDDC3-204ENST00000559834 LRIT1Q9P2V4 623 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 LHX3Q9UBR4 397 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 PISDQ9UG56 409 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 RABGEF1Q9UJ41 708 aa9.23□□□□□ -0.93
HDDC3-204ENST00000559834 BPTFQ12830 3046 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 EFSO43281 561 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 DAPK3O43293 454 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 CCP110O43303 1012 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 NUDT21O43809 227 aaKnown RBP9.22□□□□□ -0.93
HDDC3-204ENST00000559834 BUB1BO60566 1050 aaPredicted RBP9.22□□□□□ -0.93
HDDC3-204ENST00000559834 PRAMEF11O60813 436 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 RECQL5O94762 991 aaPredicted RBP9.22□□□□□ -0.93
HDDC3-204ENST00000559834 LIPCP11150 499 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 NFKBIAP25963 317 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 TRIM23P36406 574 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 MMP12P39900 470 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 KLK7P49862 253 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 RENBPP51606 427 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 KIAA1024LP59773 190 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 ZFP36L1Q07352 338 aaKnown RBP9.22□□□□□ -0.93
HDDC3-204ENST00000559834 BCL2L1Q07817 233 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 PEX6Q13608 980 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 RFTN1Q14699 578 aaPredicted RBP9.22□□□□□ -0.93
HDDC3-204ENST00000559834 KRT31Q15323 416 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 TCEA2Q15560 299 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 TSR1Q2NL82 804 aaKnown RBP9.22□□□□□ -0.93
HDDC3-204ENST00000559834 MANEAQ5SRI9 462 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 CERCAMQ5T4B2 595 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 PPP1R2P3Q6NXS1 205 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 PIM3Q86V86 326 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 NEK11Q8NG66 645 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 KIAA1524Q8TCG1 905 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 AGPAT1Q99943 283 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 B3GNT4Q9C0J1 378 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 LRRC19Q9H756 370 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 KCTD5Q9NXV2 234 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 CHMP5Q9NZZ3 219 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 MOSPD1Q9UJG1 213 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 LOXL2Q9Y4K0 774 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 LOC400499M0QZD8 3231 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 CHD5Q8TDI0 1954 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 KIF26BQ2KJY2 2108 aa9.22□□□□□ -0.93
HDDC3-204ENST00000559834 UNC13CQ8NB66 2214 aa9.21□□□□□ -0.93
HDDC3-204ENST00000559834 GCN1Q92616 2671 aaKnown RBP9.21□□□□□ -0.93
HDDC3-204ENST00000559834 A0A1W2PQ67 120 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 A0A1W2PQC6 194 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 J3KR12 359 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 CASC3O15234 703 aaKnown RBP9.21□□□□□ -0.94
HDDC3-204ENST00000559834 NOBOXO60393 691 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 WISP1O95388 367 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 ELFN1P0C7U0 828 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 HGFP14210 728 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 CD82P27701 267 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 PAPOLAP51003 745 aaKnown RBP9.21□□□□□ -0.94
HDDC3-204ENST00000559834 RPL7AP62424 266 aaKnown RBP9.21□□□□□ -0.94
HDDC3-204ENST00000559834 NFATC3Q12968 1075 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 BIRC2Q13490 618 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 TGIF1Q15583 401 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 CLPPQ16740 277 aaPredicted RBP9.21□□□□□ -0.94
HDDC3-204ENST00000559834 C14orf28Q4W4Y0 310 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 ERMARDQ5T6L9 678 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 CDKAL1Q5VV42 579 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 AFMIDQ63HM1 303 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 ACAD10Q6JQN1 1059 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 PNCKQ6P2M8 343 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 LIPIQ6XZB0 460 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 MON1BQ7L1V2 547 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 PRICKLE2Q7Z3G6 844 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 PLA2G15Q8NCC3 412 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 OR1E3Q8WZA6 343 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 USP7Q93009 1102 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 FUBP1Q96AE4 644 aaKnown RBP9.21□□□□□ -0.94
HDDC3-204ENST00000559834 CELF6Q96J87 481 aaKnown RBP9.21□□□□□ -0.94
HDDC3-204ENST00000559834 MCEEQ96PE7 176 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 CINPQ9BW66 212 aaPredicted RBP9.21□□□□□ -0.94
HDDC3-204ENST00000559834 SLC39A8Q9C0K1 460 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 PDFQ9HBH1 243 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 RNF215Q9Y6U7 377 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 FLNBO75369 2602 aaKnown RBP9.21□□□□□ -0.94
HDDC3-204ENST00000559834 ZNF462Q96JM2 2506 aa9.21□□□□□ -0.94
HDDC3-204ENST00000559834 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.2□□□□□ -0.94
HDDC3-204ENST00000559834 TCRBV5S1A1TA0A578 114 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 TMEM202A6NGA9 273 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 RHPN2P1A8MT19 583 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 EEF2KO00418 725 aaKnown RBP9.2□□□□□ -0.94
HDDC3-204ENST00000559834 EPHB6O15197 1021 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 TEX33O43247 280 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 RNF8O76064 485 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 CPNE6O95741 557 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 PRKCGP05129 697 aa9.2□□□□□ -0.94
HDDC3-204ENST00000559834 CDK11BP21127 795 aaKnown RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms