RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TIGD2Q4W5G0 525 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 C6orf10Q5SRN2 563 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 NAPEPLDQ6IQ20 393 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 TMEM53Q6P2H8 277 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 DCDC5Q6ZRR9 648 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 LYSMD3Q7Z3D4 306 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 MFSD6LQ8IWD5 586 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 PPHLN1Q8NEY8 458 aaKnown RBP11.38□□□□□ -0.59
LDLR-208ENST00000558518 STYXQ8WUJ0 223 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 MUS81Q96NY9 551 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 NSUN5Q96P11 429 aaKnown RBP11.38□□□□□ -0.59
LDLR-208ENST00000558518 WDCPQ9H6R7 721 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 IFT80Q9P2H3 777 aaPredicted RBP11.38□□□□□ -0.59
LDLR-208ENST00000558518 ADAM28Q9UKQ2 775 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 FBXO5Q9UKT4 447 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 NDUFAF1Q9Y375 327 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 YJEFN3A6XGL0 299 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 AP3B1O00203 1094 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 ATICP31939 592 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 GMPSP49915 693 aaPredicted RBP11.38□□□□□ -0.59
LDLR-208ENST00000558518 OCA2Q04671 838 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 DCAF15Q66K64 600 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 SLC26A9Q7LBE3 791 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 TFAP2DQ7Z6R9 452 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 HEATR4Q86WZ0 1026 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 PAF1Q8N7H5 531 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 ANKRD52Q8NB46 1076 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 SMG8Q8ND04 991 aaKnown RBP11.38□□□□□ -0.59
LDLR-208ENST00000558518 BEST2Q8NFU1 509 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 FBXO30Q8TB52 745 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 ITCHQ96J02 903 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 PPP1R10Q96QC0 940 aaKnown RBP11.38□□□□□ -0.59
LDLR-208ENST00000558518 KCTD14Q9BQ13 255 aaPredicted RBP11.38□□□□□ -0.59
LDLR-208ENST00000558518 HEPHQ9BQS7 1158 aa11.38□□□□□ -0.59
LDLR-208ENST00000558518 NPLQ9BXD5 320 aaPredicted RBP11.38□□□□□ -0.59
LDLR-208ENST00000558518 A8MT66 165 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 HACD1B0YJ81 288 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 SLCO1B7G3V0H7 640 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 LSM1O15116 133 aaKnown RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 ADAM23O75077 832 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 E2F6O75461 281 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 PORP16435 677 aaPredicted RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 ATP5F1P24539 256 aaPredicted RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 DIO3P55073 304 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 TXNL4AP83876 142 aaKnown RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 NRG1Q02297 640 aaPredicted RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 SQLEQ14534 574 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 TSTD2Q5T7W7 516 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 NEPROQ6NW34 567 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 Q6ZNX1 250 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 HS3ST5Q8IZT8 346 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 HASPINQ8TF76 798 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 HTRA1Q92743 480 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 TEPSINQ96N21 525 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 TBCDQ9BTW9 1192 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 IL22Q9GZX6 179 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 BRD8Q9H0E9 1235 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 AKTIPQ9H8T0 292 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 EML4Q9HC35 981 aaKnown RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 ITM2CQ9NQX7 267 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 TBC1D13Q9NVG8 400 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 SLAMF8Q9P0V8 285 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 PIN4Q9Y237 131 aaKnown RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 COQ9O75208 318 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 H2AFYO75367 372 aaKnown RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 GRM5P41594 1212 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 FOXA1P55317 472 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 SLC25A52Q3SY17 297 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 NHSL2Q5HYW2 709 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 CATSPERGQ6ZRH7 1159 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 NANOGNBQ7Z5D8 188 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 TMEM135Q86UB9 458 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 ABI1Q8IZP0 508 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 AFG1LQ8WV93 481 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 TFAP2CQ92754 450 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 CASP10Q92851 521 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 GLMNQ92990 594 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 PPM1MQ96MI6 270 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 GMLQ99445 158 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 SLC2A11Q9BYW1 496 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 ASB7Q9H672 318 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 NOL6Q9H6R4 1146 aaKnown RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 PRDM8Q9NQV8 689 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 FAM50BQ9Y247 325 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 LOXHD1Q8IVV2 1947 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 A6NL46 340 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 SYCE1LA8MT33 242 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 ZBTB42B2RXF5 422 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 PIP5K1BO14986 540 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 SYNCRIPO60506 623 aaKnown RBP11.37□□□□□ -0.59
LDLR-208ENST00000558518 RECQL4O94761 1208 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 ALDH3B2P48448 385 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 CD97P48960 835 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 ENPEPQ07075 957 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 GRM1Q13255 1194 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 KCTD2Q14681 263 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 LAPTM4AQ15012 233 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 PAGE2BQ5JRK9 111 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 FBXO47Q5MNV8 452 aa11.37□□□□□ -0.59
LDLR-208ENST00000558518 EPHX4Q8IUS5 362 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms