RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TUBBP07437 444 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 PRLRP16471 622 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 TGM2P21980 687 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 CTNNA2P26232 953 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 EPHA8P29322 1005 aaPredicted RBP8.72□□□□□ -1.01
USP3-208ENST00000558285 HNF1BP35680 557 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 TAS2R38P59533 333 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 COPS2P61201 443 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 SHC2P98077 582 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 N4BP2L1Q5TBK1 243 aaPredicted RBP8.72□□□□□ -1.01
USP3-208ENST00000558285 Q6ZSR6 202 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 CYP4V2Q6ZWL3 525 aaPredicted RBP8.72□□□□□ -1.01
USP3-208ENST00000558285 ABI3BPQ7Z7G0 1075 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 DAAM2Q86T65 1068 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 PACS2Q86VP3 889 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 RFX6Q8HWS3 928 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 RAVER1Q8IY67 606 aaKnown RBP8.72□□□□□ -1.01
USP3-208ENST00000558285 NPWQ8N729 165 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 UBL4BQ8N7F7 174 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 TSEN2Q8NCE0 465 aaKnown RBP8.72□□□□□ -1.01
USP3-208ENST00000558285 PDCD6IPQ8WUM4 868 aaKnown RBP8.72□□□□□ -1.01
USP3-208ENST00000558285 FAF2Q96CS3 445 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 HDAC11Q96DB2 347 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 TBATAQ96M53 351 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 RNF157Q96PX1 679 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 MGME1Q9BQP7 344 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 PACSIN1Q9BY11 444 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 MAGEB5Q9BZ81 275 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 SLC13A1Q9BZW2 595 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 ARFGAP3Q9NP61 516 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 RAD18Q9NS91 495 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 SPASTQ9UBP0 616 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 PCOLCE2Q9UKZ9 415 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 DOLKQ9UPQ8 538 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 TTLL3Q9Y4R7 772 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 PCDHGA1Q9Y5H4 931 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 CEP192Q8TEP8 1941 aa8.72□□□□□ -1.01
USP3-208ENST00000558285 WDFY4Q6ZS81 3184 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 TMEM8BA6NDV4 472 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 BTNL10A8MVZ5 291 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 CCNB1P14635 433 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 ZNF30P17039 623 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 DAB2P98082 770 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 E2F1Q01094 437 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 SLC10A7Q0GE19 358 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 MTM1Q13496 603 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 BRD3Q15059 726 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 ERCC6LQ2NKX8 1250 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 SEL1L3Q68CR1 1132 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 CAMK1DQ8IU85 385 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 REXO1L1PQ8IX06 675 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 FSTL5Q8N475 847 aaPredicted RBP8.71□□□□□ -1.01
USP3-208ENST00000558285 TPCN2Q8NHX9 752 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 CCHCR1Q8TD31 782 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 P3H4Q92791 437 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 VAT1Q99536 393 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 ORAI3Q9BRQ5 295 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 KLC2Q9H0B6 622 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 NT5MQ9NPB1 228 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 PCDH12Q9NPG4 1184 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 FSCN3Q9NQT6 498 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 RBM22Q9NW64 420 aaKnown RBP eCLIP8.71□□□□□ -1.016e-10■■■■□ 22.8
USP3-208ENST00000558285 DNAJC28Q9NX36 388 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 ADAM21Q9UKJ8 722 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 SUFUQ9UMX1 484 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 HEY1Q9Y5J3 304 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 CSNK1G3Q9Y6M4 447 aa8.71□□□□□ -1.01
USP3-208ENST00000558285 TNRC6BQ9UPQ9 1833 aaKnown RBP8.71□□□□□ -1.01
USP3-208ENST00000558285 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.71□□□□□ -1.02
USP3-208ENST00000558285 MIF4GDA9UHW6 222 aaKnown RBP8.71□□□□□ -1.02
USP3-208ENST00000558285 MMP20O60882 483 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 PIGNO95427 931 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 ALPIP09923 528 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 CTSEP14091 401 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 TIMP2P16035 220 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 COMTP21964 271 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 VIPR1P32241 457 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 MMP12P39900 470 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 VAV2P52735 878 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 METAP1P53582 386 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 CCZ1BP86790 482 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 CCZ1P86791 482 aaPredicted RBP8.71□□□□□ -1.02
USP3-208ENST00000558285 AP1B1Q10567 949 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 FOXC1Q12948 553 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 PDE1CQ14123 709 aaPredicted RBP8.71□□□□□ -1.02
USP3-208ENST00000558285 ACOX1Q15067 660 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 AGERQ15109 404 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 ELOCQ15369 112 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 TFDP3Q5H9I0 405 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 ARTNQ5T4W7 220 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 NCBP2-AS2Q69YL0 99 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 DBX2Q6ZNG2 339 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 DPPA4Q7L190 304 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 KATNAL2Q8IYT4 538 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 GPATCH11Q8N954 259 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 EXD1Q8NHP7 514 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 PCDH19Q8TAB3 1148 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 HNRNPLLQ8WVV9 542 aaKnown RBP8.71□□□□□ -1.02
USP3-208ENST00000558285 KLK6Q92876 244 aa8.71□□□□□ -1.02
USP3-208ENST00000558285 ECHDC3Q96DC8 303 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms