RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 TFRCP02786 760 aaKnown RBP3.25□□□□□ -1.89
SCFD1-218ENST00000556256 TUBBP07437 444 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 SERPINA4P29622 427 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 MCM2P49736 904 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 ACTR2P61160 394 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 TUBB4BP68371 445 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 CAPSQ13938 189 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 OASLQ15646 514 aaKnown RBP3.25□□□□□ -1.89
SCFD1-218ENST00000556256 TBRG1Q3YBR2 411 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 RINLQ6ZS11 566 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 RRAGAQ7L523 313 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 GALNT7Q86SF2 657 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 CPOQ8IVL8 374 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 MCPH1Q8NEM0 835 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 SPATA22Q8NHS9 363 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 CPT1BQ92523 772 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 TMEM19Q96HH6 336 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 TAF1DQ9H5J8 278 aaPredicted RBP3.25□□□□□ -1.89
SCFD1-218ENST00000556256 RRN3Q9NYV6 651 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 PDP2Q9P2J9 529 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 KCND3Q9UK17 655 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 GTF2A1LQ9UNN4 478 aa3.25□□□□□ -1.89
SCFD1-218ENST00000556256 LRRFIP2Q9Y608 721 aaKnown RBP3.25□□□□□ -1.89
SCFD1-218ENST00000556256 E7EVH7 732 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 EIF3FO00303 357 aaPredicted RBP3.24□□□□□ -1.89
SCFD1-218ENST00000556256 CAPN9O14815 690 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 SYN3O14994 580 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 MID1O15344 667 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 HSPA12AO43301 675 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 TIPRLO75663 272 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 WEE2P0C1S8 567 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 AVPR2P30518 371 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 KRT9P35527 623 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 ADCK5Q3MIX3 580 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 ZNF876PQ49A33 203 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 KRTAP5-5Q701N2 237 aaPredicted RBP3.24□□□□□ -1.89
SCFD1-218ENST00000556256 RASGRP2Q7LDG7 609 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 LRRTM4Q86VH4 590 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 BRSK2Q8IWQ3 736 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 CCDC105Q8IYK2 499 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 KCNH5Q8NCM2 988 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 IL17REQ8NFR9 667 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 RASSF8Q8NHQ8 419 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 CSGALNACT1Q8TDX6 532 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 CREB3L4Q8TEY5 395 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 RUBCNQ92622 972 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 TRIM63Q969Q1 353 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 ARRDC3Q96B67 414 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 C3orf49Q96BT1 292 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 ALG14Q96F25 216 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 ZSCAN31Q96LW9 406 aaPredicted RBP3.24□□□□□ -1.89
SCFD1-218ENST00000556256 PYM1Q9BRP8 204 aaKnown RBP3.24□□□□□ -1.89
SCFD1-218ENST00000556256 SEPSECSQ9HD40 501 aaKnown RBP3.24□□□□□ -1.89
SCFD1-218ENST00000556256 RCE1Q9Y256 329 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 KCNK7Q9Y2U2 307 aa3.24□□□□□ -1.89
SCFD1-218ENST00000556256 A0A1B0GVC2 190 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 CNPP09543 421 aaKnown RBP3.23□□□□□ -1.89
SCFD1-218ENST00000556256 CYP4B1P13584 511 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 NR1D1P20393 614 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 PAX3P23760 479 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 IL15P40933 162 aaPredicted RBP3.23□□□□□ -1.89
SCFD1-218ENST00000556256 AARSP49588 968 aaKnown RBP eCLIP3.23□□□□□ -1.89
SCFD1-218ENST00000556256 IRX6P78412 446 aaPredicted RBP3.23□□□□□ -1.89
SCFD1-218ENST00000556256 ALFQ53S48 1182 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 SPINK14Q6IE38 97 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 SYT13Q7L8C5 426 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 ZC3HC1Q86WB0 502 aaKnown RBP3.23□□□□□ -1.89
SCFD1-218ENST00000556256 C2CD5Q86YS7 1000 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 METTL27Q8N6F8 245 aaPredicted RBP3.23□□□□□ -1.89
SCFD1-218ENST00000556256 AFG1LQ8WV93 481 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 KTI12Q96EK9 354 aaPredicted RBP3.23□□□□□ -1.89
SCFD1-218ENST00000556256 TBATAQ96M53 351 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 TWNKQ96RR1 684 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 BRD8Q9H0E9 1235 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 CXorf56Q9H5V9 222 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 TMLHEQ9NVH6 421 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 TMEM160Q9NX00 188 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 C9orf78Q9NZ63 289 aaPredicted RBP3.23□□□□□ -1.89
SCFD1-218ENST00000556256 DHDHQ9UQ10 334 aa3.23□□□□□ -1.89
SCFD1-218ENST00000556256 ASPDHA6ND91 283 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 C17orf100A8MU93 164 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 CCNT1O60563 726 aaKnown RBP3.22□□□□□ -1.89
SCFD1-218ENST00000556256 FMO5P49326 533 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 PAPOLAP51003 745 aaKnown RBP3.22□□□□□ -1.89
SCFD1-218ENST00000556256 CCR5P51681 352 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 RPS6KA3P51812 740 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 RPS6KA2Q15349 733 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 MAP3K21Q5TCX8 1036 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 LCTLQ6UWM7 567 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 BBS12Q6ZW61 710 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 PTGR2Q8N8N7 351 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-218ENST00000556256 CNBD1Q8NA66 436 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 SLC24A4Q8NFF2 622 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 ARRDC2Q8TBH0 407 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 C17orf77Q96MU5 243 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 HERC2P3Q9BVR0 1158 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 UBXN6Q9BZV1 441 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 RIC8AQ9NPQ8 531 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 KLHL1Q9NR64 748 aa3.22□□□□□ -1.89
SCFD1-218ENST00000556256 GGA3Q9NZ52 723 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms