RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 SATB1Q01826 763 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 TAF1AQ15573 450 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-220ENST00000555634 UGP2Q16851 508 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 SKIDA1Q1XH10 827 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 SPANXN3Q5MJ09 141 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 SPDYCQ5MJ68 293 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 ERN2Q76MJ5 926 aaKnown RBP11.25□□□□□ -0.61
SHMT2-220ENST00000555634 TMC3Q7Z5M5 1100 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 TTC7BQ86TV6 843 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 ANKMY2Q8IV38 441 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 OTUD6BQ8N6M0 293 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 FBXO36Q8NEA4 188 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 CXorf40AQ8TE69 158 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 HNRNPLLQ8WVV9 542 aaKnown RBP11.25□□□□□ -0.61
SHMT2-220ENST00000555634 SPOCK2Q92563 424 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 PEX13Q92968 403 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.25□□□□□ -0.61
SHMT2-220ENST00000555634 SIPA1Q96FS4 1042 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 TRIB3Q96RU7 358 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 RANBP9Q96S59 729 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 HDAC8Q9BY41 377 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 FOXQ1Q9C009 403 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 PIH1D1Q9NWS0 290 aaKnown RBP11.25□□□□□ -0.61
SHMT2-220ENST00000555634 SYBUQ9NX95 663 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 PKD2L2Q9NZM6 624 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 TXNDC16Q9P2K2 825 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 PPM1HQ9ULR3 514 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 FZD4Q9ULV1 537 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 ZNF711Q9Y462 761 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 TCAF1Q9Y4C2 921 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 IKBKGQ9Y6K9 419 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 PRUNE2Q8WUY3 3088 aa11.25□□□□□ -0.61
SHMT2-220ENST00000555634 A0A087WUV0 522 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 FAM237BA0A1B0GVD1 139 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 E7ESA3 106 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 TRAFD1O14545 582 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 STX7O15400 261 aaKnown RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 RNASEH2AO75792 299 aaKnown RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 USP1O94782 785 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 APBB3O95704 486 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 ATXN1LP0C7T5 689 aaKnown RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 ADRB3P13945 408 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 CTPS1P17812 591 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 ECHS1P30084 290 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 VIPR1P32241 457 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 SLC8A1P32418 973 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 ELK3P41970 407 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 MAGEA3P43357 314 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 CCR3P51677 355 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 IFFO1Q0D2I5 559 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 CRY1Q16526 586 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 QPCTQ16769 361 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 KCTD19Q17RG1 926 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 POM121L1PQ3SYA9 428 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 USP30Q70CQ3 517 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 ZNF534Q76KX8 674 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 PARS2Q7L3T8 475 aaKnown RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 TAOK1Q7L7X3 1001 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 CAND1Q86VP6 1230 aaKnown RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 TMPRSS6Q8IU80 811 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 RELL1Q8IUW5 271 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 SPEM1Q8N4L4 309 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 GSDMBQ8TAX9 411 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 BRSK1Q8TDC3 778 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 AENQ8WTP8 325 aaKnown RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 HMGB4Q8WW32 186 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 EZH1Q92800 747 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 EDAQ92838 391 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 ZNF669Q96BR6 464 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 SCRN2Q96FV2 425 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 SPACA7Q96KW9 195 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 EBNA1BP2Q99848 306 aaKnown RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 C1QTNF7Q9BXJ2 289 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 CDH19Q9H159 772 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 CHRDQ9H2X0 955 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 PABPC3Q9H361 631 aaKnown RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 MTG2Q9H4K7 406 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 ZFYVE1Q9HBF4 777 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 PPANQ9NQ55 473 aaKnown RBP11.24□□□□□ -0.61
SHMT2-220ENST00000555634 KCTD5Q9NXV2 234 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 SOX13Q9UN79 622 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 RPS6KL1Q9Y6S9 549 aa11.24□□□□□ -0.61
SHMT2-220ENST00000555634 GOLGA6L10A6NI86 522 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 H0Y858 1186 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 PSMD11O00231 422 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 MID1O15344 667 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 FZD6O60353 706 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 ADAM23O75077 832 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 AVILO75366 819 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 PAPSS2O95340 614 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-220ENST00000555634 CTSLP07711 333 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 PDHA1P08559 390 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 TPH1P17752 444 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 LPOP22079 712 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-220ENST00000555634 PPARGP37231 505 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-220ENST00000555634 ABL2P42684 1182 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 ILF2Q12905 390 aaKnown RBP11.23□□□□□ -0.61
SHMT2-220ENST00000555634 MTM1Q13496 603 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 THOC5Q13769 683 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms