RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 FAM129BQ96TA1 746 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 NAT9Q9BTE0 207 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 CENPHQ9H3R5 247 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 PRSS16Q9NQE7 514 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 MOCS1Q9NZB8 636 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 CTNNAL1Q9UBT7 734 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 FAM169AQ9Y6X4 670 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 ATG2BQ96BY7 2078 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 KIAA1549LQ6ZVL6 1849 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 TRIOO75962 3097 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 MROH6A6NGR9 719 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 UGT1A9O60656 530 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 VAPBO95292 243 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 SYF2O95926 243 aaKnown RBP10.25□□□□□ -0.77
SRP54-208ENST00000555557 HNRNPLP14866 589 aaKnown RBP eCLIP10.25□□□□□ -0.778e-11■■□□□ 12.2
SRP54-208ENST00000555557 TSHRP16473 764 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 GCAP28676 217 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 HNF1BP35680 557 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 STAT4Q14765 748 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 KRT71Q3SY84 523 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 SPANXN3Q5MJ09 141 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 TSTD2Q5T7W7 516 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 LRIG3Q6UXM1 1119 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 CACUL1Q86Y37 369 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 SUGP1Q8IWZ8 645 aaKnown RBP10.25□□□□□ -0.77
SRP54-208ENST00000555557 CTAGE3PQ8IX95 158 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 PNPLA1Q8N8W4 532 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 OR13C4Q8NGS5 318 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 FAM3CQ92520 227 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 EID2BQ96D98 161 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 ZNF641Q96N77 438 aaPredicted RBP10.25□□□□□ -0.77
SRP54-208ENST00000555557 RANBP9Q96S59 729 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 ACSS3Q9H6R3 686 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 UGT1A7Q9HAW7 530 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 UGT1A10Q9HAW8 530 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 UGT1A8Q9HAW9 530 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 BPIFA1Q9NP55 256 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 SLC2A4RGQ9NR83 387 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 TREX1Q9NSU2 369 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 POLR3BQ9NW08 1133 aaPredicted RBP10.25□□□□□ -0.77
SRP54-208ENST00000555557 PRKAG3Q9UGI9 489 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 TBK1Q9UHD2 729 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 CA14Q9ULX7 337 aa10.25□□□□□ -0.77
SRP54-208ENST00000555557 A0A0J9YYE9 177 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 GOLGA8CPA6NN73 597 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 FOXO6A8MYZ6 492 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 PLK4O00444 970 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 KPNA3O00505 521 aaPredicted RBP10.24□□□□□ -0.77
SRP54-208ENST00000555557 RASGRF2O14827 1237 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 SPAG6O75602 509 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 FAM155BO75949 473 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 ALDH1A2O94788 518 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 TRBC1P01850 177 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 CHRM1P11229 460 aaPredicted RBP10.24□□□□□ -0.77
SRP54-208ENST00000555557 DRD1P21728 446 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 ARNTP27540 789 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 STX2P32856 288 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 GRIA4P48058 902 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 ARSDP51689 593 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 EIF3BP55884 814 aaKnown RBP10.24□□□□□ -0.77
SRP54-208ENST00000555557 ELAVL3Q14576 367 aaKnown RBP10.24□□□□□ -0.77
SRP54-208ENST00000555557 GRM3Q14832 879 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 HSP90AA5PQ58FG0 334 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 KIAA1211LQ6NV74 962 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 LYSMD3Q7Z3D4 306 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 TSPAN33Q86UF1 283 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 MMAAQ8IVH4 418 aaKnown RBP10.24□□□□□ -0.77
SRP54-208ENST00000555557 PPM1NQ8N819 430 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 IL17RCQ8NAC3 791 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 OR13J1Q8NGT2 312 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 OR8D1Q8WZ84 308 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 ARL8AQ96BM9 186 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 CERS2Q96G23 380 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 DNAJC1Q96KC8 554 aaKnown RBP10.24□□□□□ -0.77
SRP54-208ENST00000555557 CYTH2Q99418 400 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 AGAP2Q99490 1192 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 CCDC77Q9BR77 488 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 SUDS3Q9H7L9 328 aaPredicted RBP10.24□□□□□ -0.77
SRP54-208ENST00000555557 MRM3Q9HC36 420 aaKnown RBP10.24□□□□□ -0.77
SRP54-208ENST00000555557 C20orf96Q9NUD7 363 aaPredicted RBP10.24□□□□□ -0.77
SRP54-208ENST00000555557 BCCIPQ9P287 314 aaKnown RBP eCLIP10.24□□□□□ -0.77
SRP54-208ENST00000555557 SUN2Q9UH99 717 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 PPM1HQ9ULR3 514 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 PHTF1Q9UMS5 762 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 NDRG2Q9UN36 371 aaKnown RBP10.24□□□□□ -0.77
SRP54-208ENST00000555557 DUSP12Q9UNI6 340 aa10.24□□□□□ -0.77
SRP54-208ENST00000555557 ANKRD36A6QL64 1941 aa10.23□□□□□ -0.77
SRP54-208ENST00000555557 OR51F1A6NGY5 319 aa10.23□□□□□ -0.77
SRP54-208ENST00000555557 NPIPB15A6NHN6 443 aaPredicted RBP10.23□□□□□ -0.77
SRP54-208ENST00000555557 C16orf96A6NNT2 1141 aa10.23□□□□□ -0.77
SRP54-208ENST00000555557 ADAM23O75077 832 aa10.23□□□□□ -0.77
SRP54-208ENST00000555557 RNF40O75150 1001 aa10.23□□□□□ -0.77
SRP54-208ENST00000555557 CLDN7O95471 211 aa10.23□□□□□ -0.77
SRP54-208ENST00000555557 KLF8O95600 359 aaPredicted RBP10.23□□□□□ -0.77
SRP54-208ENST00000555557 IL1BP01584 269 aa10.23□□□□□ -0.77
SRP54-208ENST00000555557 GSTA2P09210 222 aa10.23□□□□□ -0.77
SRP54-208ENST00000555557 TIMP2P16035 220 aa10.23□□□□□ -0.77
SRP54-208ENST00000555557 ARCN1P48444 511 aaKnown RBP10.23□□□□□ -0.77
SRP54-208ENST00000555557 RPL26P61254 145 aaKnown RBP10.23□□□□□ -0.77
SRP54-208ENST00000555557 ENPP2Q13822 863 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms