RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CRTAC1Q9NQ79 661 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 DDIT4Q9NX09 232 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 GDAP2Q9NXN4 497 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 RRN3Q9NYV6 651 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NCKIPSDQ9NZQ3 722 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 MAP10Q9P2G4 905 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 TRHDEQ9UKU6 1024 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ZNF236Q9UL36 1845 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 TRIM64CA6NLI5 447 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 AP3B1O00203 1094 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 MTSS1O43312 755 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 AKAP10O43572 662 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NRP2O60462 931 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 TPST1O60507 370 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 GPR32O75388 356 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 BMP10O95393 424 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 SNRPB2P08579 225 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 CD247P20963 164 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 DNAJB2P25686 324 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 LRPAP1P30533 357 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 OXTRP30559 389 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 POLD2P49005 469 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 LILRA4P59901 499 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 DNAJB13P59910 316 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 PFKPQ01813 784 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 SQLEQ14534 574 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 MAPRE2Q15555 327 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 PCID2Q5JVF3 399 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 WSCD1Q658N2 575 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ZNF470Q6ECI4 717 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NAPEPLDQ6IQ20 393 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 TMEM207Q6UWW9 146 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 LARP4Q71RC2 724 aaKnown RBP eCLIP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ERMP1Q7Z2K6 904 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 LYSMD3Q7Z3D4 306 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 GPR180Q86V85 440 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 RBM12BQ8IXT5 1001 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 SIX6OS1Q8N1H7 587 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ANKFN1Q8N957 763 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 KLHL23Q8NBE8 558 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 HM13Q8TCT9 377 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 KCTD13Q8WZ19 329 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ISOC1Q96CN7 298 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 BIRC8Q96P09 236 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 PLEKHG4BQ96PX9 1271 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 MRPL57Q9BQC6 102 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 FICDQ9BVA6 458 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 COLEC11Q9BWP8 271 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 RHOBTB2Q9BYZ6 727 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NAA50Q9GZZ1 169 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 TKTL2Q9H0I9 626 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 GSTO2Q9H4Y5 243 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 SOX17Q9H6I2 414 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 ELP3Q9H9T3 547 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 CLK4Q9HAZ1 481 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 IL1RL2Q9HB29 575 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NDFIP2Q9NV92 336 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 HACD3Q9P035 362 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 OR12D3Q9UGF7 316 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 EGFL7Q9UHF1 273 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 UBQLN1Q9UMX0 589 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NEU3Q9UQ49 428 aa5.45□□□□□ -1.54
LIMA1-212ENST00000552491 BRCA1P38398 1863 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NYNRINQ9P2P1 1898 aaKnown RBP5.45□□□□□ -1.54
LIMA1-212ENST00000552491 NRCAMQ92823 1304 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 A0A0G2JLL6 359 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 MYBPHLA2RUH7 354 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 BOLA2-SMG1P6H3BVE0 249 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 IPO13O94829 963 aaKnown RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 SEC24DO94855 1032 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 SLC25A27O95847 323 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 BMP2P12643 396 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 GPX3P22352 226 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 VARSP26640 1264 aaKnown RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ADRA1AP35348 466 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 HCAR3P49019 387 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 TAF6P49848 677 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 AIF1P55008 147 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 PPIL2Q13356 520 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 UGP2Q16851 508 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 UGT3A2Q3SY77 523 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 INTS6LQ5JSJ4 861 aaKnown RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ARTNQ5T4W7 220 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 IRAK1BP1Q5VVH5 260 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 FAM45BPQ6NSW5 357 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 Q6ZNX1 250 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 PRRT2Q7Z6L0 340 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 LDB1Q86U70 411 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ZBTB46Q86UZ6 589 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 FAM35AQ86V20 835 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 DHFR2Q86XF0 187 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 SPPL2CQ8IUH8 684 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 CROCCP3Q8IVE0 287 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ARHGAP12Q8IWW6 846 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 LRRC43Q8N309 656 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 ZNF786Q8N393 782 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 C2CD4AQ8NCU7 369 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-212ENST00000552491 OR2T34Q8NGX1 318 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 OR2T3Q8NH03 318 aa5.44□□□□□ -1.54
LIMA1-212ENST00000552491 FAM45AQ8TCE6 357 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms