RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 XKR5Q6UX68 686 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 B3GNT8Q7Z7M8 397 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 NETO2Q8NC67 525 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 NEK11Q8NG66 645 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 EXOC2Q96KP1 924 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 MCEEQ96PE7 176 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 LRRN3Q9H3W5 708 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 SYNDIG1Q9H7V2 258 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 EPB41L5Q9HCM4 733 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 SIRPGQ9P1W8 387 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 RABGEF1Q9UJ41 708 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 OR1A2Q9Y585 309 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 A0A1W2PQM1 296 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 ARHGAP42A6NI28 874 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 CACNB4O00305 520 aaPredicted RBP12.93□□□□□ -0.34
PTCH1-221ENST00000550914 CASC3O15234 703 aaKnown RBP12.93□□□□□ -0.34
PTCH1-221ENST00000550914 BUB1BO60566 1050 aaPredicted RBP12.93□□□□□ -0.34
PTCH1-221ENST00000550914 GLB1P16278 677 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 KELP23276 732 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 SERPINA4P29622 427 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 SLC5A2P31639 672 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 TPI1P60174 286 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 POLR2LP62875 67 aaKnown RBP12.93□□□□□ -0.34
PTCH1-221ENST00000550914 NSUN2Q08J23 767 aaKnown RBP eCLIP12.93□□□□□ -0.34
PTCH1-221ENST00000550914 RFTN1Q14699 578 aaPredicted RBP12.93□□□□□ -0.34
PTCH1-221ENST00000550914 ZSCAN23Q3MJ62 389 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 CERCAMQ5T4B2 595 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 DCUN1D2Q6PH85 259 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 OGFOD3Q6PK18 319 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 RD3Q7Z3Z2 195 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 SRLQ86TD4 932 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 CCNJLQ8IV13 435 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 ANKRD20A12PQ8NF67 263 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 OR56A4Q8NGH8 313 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 SPOCK2Q92563 424 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 ECHDC3Q96DC8 303 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 AGPAT1Q99943 283 aa12.93□□□□□ -0.34
PTCH1-221ENST00000550914 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.93□□□□□ -0.34
PTCH1-221ENST00000550914 LGALS16A8MUM7 142 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 J3KR12 359 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 NUDT21O43809 227 aaKnown RBP12.92□□□□□ -0.34
PTCH1-221ENST00000550914 PCCBP05166 539 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 CCDC172P0C7W6 258 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 TRIM23P36406 574 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 COPB1P53618 953 aaKnown RBP12.92□□□□□ -0.34
PTCH1-221ENST00000550914 ZFP36L1Q07352 338 aaKnown RBP12.92□□□□□ -0.34
PTCH1-221ENST00000550914 TSR1Q2NL82 804 aaKnown RBP12.92□□□□□ -0.34
PTCH1-221ENST00000550914 KIAA1614Q5VZ46 1190 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 AFMIDQ63HM1 303 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 ZSWIM9Q86XI8 627 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 CAMK1DQ8IU85 385 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 MCOLN2Q8IZK6 566 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 TSEN2Q8NCE0 465 aaKnown RBP12.92□□□□□ -0.34
PTCH1-221ENST00000550914 PDXPQ96GD0 296 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 ERGIC2Q96RQ1 377 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 B3GNT4Q9C0J1 378 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 SEPT11Q9NVA2 429 aaKnown RBP12.92□□□□□ -0.34
PTCH1-221ENST00000550914 FANCLQ9NW38 375 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 KCTD5Q9NXV2 234 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 LIMA1Q9UHB6 759 aaKnown RBP12.92□□□□□ -0.34
PTCH1-221ENST00000550914 AP4E1Q9UPM8 1137 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 BSNQ9UPA5 3926 aa12.92□□□□□ -0.34
PTCH1-221ENST00000550914 ZFC3H1O60293 1989 aaKnown RBP12.91□□□□□ -0.34
PTCH1-221ENST00000550914 LRRC10BA6NIK2 292 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 PDE2AO00408 941 aaPredicted RBP12.91□□□□□ -0.34
PTCH1-221ENST00000550914 EEF2KO00418 725 aaKnown RBP12.91□□□□□ -0.34
PTCH1-221ENST00000550914 EFSO43281 561 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 NOBOXO60393 691 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 PALMO75781 387 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 RECQL5O94762 991 aaPredicted RBP12.91□□□□□ -0.34
PTCH1-221ENST00000550914 ITGB2P05107 769 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 ELFN1P0C7U0 828 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 JMJD7P0C870 316 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 LIPCP11150 499 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 PAPOLAP51003 745 aaKnown RBP12.91□□□□□ -0.34
PTCH1-221ENST00000550914 ZNF135P52742 658 aaPredicted RBP12.91□□□□□ -0.34
PTCH1-221ENST00000550914 BCL2L1Q07817 233 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 RALGDSQ12967 914 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 HLTFQ14527 1009 aaKnown RBP eCLIP12.91□□□□□ -0.34
PTCH1-221ENST00000550914 C14orf28Q4W4Y0 310 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 ACAD10Q6JQN1 1059 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 LIPIQ6XZB0 460 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 DPPA4Q7L190 304 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 SPRED1Q7Z699 444 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 TAF8Q7Z7C8 310 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 JAMLQ86YT9 394 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 PSTKQ8IV42 348 aaKnown RBP12.91□□□□□ -0.34
PTCH1-221ENST00000550914 PLA2G15Q8NCC3 412 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 FAM46DQ8NEK8 389 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 OR1E3Q8WZA6 343 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 FUBP1Q96AE4 644 aaKnown RBP12.91□□□□□ -0.34
PTCH1-221ENST00000550914 SGF29Q96ES7 293 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 PCMTD1Q96MG8 357 aaPredicted RBP12.91□□□□□ -0.34
PTCH1-221ENST00000550914 FOXP3Q9BZS1 431 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 SLC39A8Q9C0K1 460 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 FGF22Q9HCT0 170 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 SEPT10Q9P0V9 454 aa12.91□□□□□ -0.34
PTCH1-221ENST00000550914 A0A1W2PQ67 120 aa12.9□□□□□ -0.34
PTCH1-221ENST00000550914 TMEM202A6NGA9 273 aa12.9□□□□□ -0.34
PTCH1-221ENST00000550914 TRAFD1O14545 582 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms