RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 TRPV4Q9HBA0 871 aa13.5□□□□□ -0.25
PTCH1-215ENST00000547672 MLXIPLQ9NP71 852 aa13.5□□□□□ -0.25
PTCH1-215ENST00000547672 DUS2Q9NX74 493 aaKnown RBP13.5□□□□□ -0.25
PTCH1-215ENST00000547672 SLC17A7Q9P2U7 560 aa13.5□□□□□ -0.25
PTCH1-215ENST00000547672 PHTF1Q9UMS5 762 aa13.5□□□□□ -0.25
PTCH1-215ENST00000547672 YBX2Q9Y2T7 364 aaKnown RBP13.5□□□□□ -0.25
PTCH1-215ENST00000547672 MTO1Q9Y2Z2 717 aaKnown RBP13.5□□□□□ -0.25
PTCH1-215ENST00000547672 COMMD10Q9Y6G5 202 aa13.5□□□□□ -0.25
PTCH1-215ENST00000547672 TNRC18O15417 2968 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-215ENST00000547672 CCDC189A1A4V9 331 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 CCDC85CA6NKD9 419 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 HTRA2O43464 458 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-215ENST00000547672 EDF1O60869 148 aaKnown RBP13.49□□□□□ -0.25
PTCH1-215ENST00000547672 PGLSO95336 258 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 C2P06681 752 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 BPGMP07738 259 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 SRPRAP08240 638 aaKnown RBP13.49□□□□□ -0.25
PTCH1-215ENST00000547672 CEBPBP17676 345 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 FOXN2P32314 431 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 CD70P32970 193 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 TTPAP49638 278 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 GALNT3Q14435 633 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 FAM83EQ2M2I3 478 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 MYLK3Q32MK0 819 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 CARD16Q5EG05 197 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 LY6G5CQ5SRR4 150 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 CERS6Q6ZMG9 384 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 NUDT18Q6ZVK8 323 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 KIAA0907Q7Z7F0 614 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-215ENST00000547672 GPR149Q86SP6 731 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 TBC1D1Q86TI0 1168 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-215ENST00000547672 STK40Q8N2I9 435 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 RYBPQ8N488 228 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-215ENST00000547672 ARMC2Q8NEN0 867 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 OR13J1Q8NGT2 312 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 BPIFB1Q8TDL5 484 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 HCAR2Q8TDS4 363 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 PDCD6IPQ8WUM4 868 aaKnown RBP13.49□□□□□ -0.25
PTCH1-215ENST00000547672 BHMTQ93088 406 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 MYO19Q96H55 970 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 CDKN2AIPNLQ96HQ2 116 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 LRIG1Q96JA1 1093 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 LMLNQ96KR4 655 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 SIKE1Q9BRV8 207 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 PBX4Q9BYU1 374 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 GPR63Q9BZJ6 419 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 SMG9Q9H0W8 520 aaKnown RBP13.49□□□□□ -0.25
PTCH1-215ENST00000547672 CCDC68Q9H2F9 335 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 POPDC3Q9HBV1 291 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 CATSPERZQ9NTU4 200 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 FGFR1OP2Q9NVK5 253 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 PLK2Q9NYY3 685 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-215ENST00000547672 SLC2A6Q9UGQ3 507 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 CCL26Q9Y258 94 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 FCF1Q9Y324 198 aaKnown RBP13.49□□□□□ -0.25
PTCH1-215ENST00000547672 VWA7Q9Y334 891 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 PCDHGC4Q9Y5F7 938 aa13.49□□□□□ -0.25
PTCH1-215ENST00000547672 FAM95CA0A1B0GW59 222 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 TTC24A2A3L6 582 aaPredicted RBP13.48□□□□□ -0.25
PTCH1-215ENST00000547672 H7C0S8 307 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 HOXC11O43248 304 aaPredicted RBP13.48□□□□□ -0.25
PTCH1-215ENST00000547672 FZD6O60353 706 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 PLIN3O60664 434 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 ARHGEF15O94989 841 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 PRLP01236 227 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 CPA3P15088 417 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 ARNTP27540 789 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 SLC1A2P43004 574 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 RGRP47804 291 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 ST8SIA6P61647 398 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 NTHL1P78549 312 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 MLLT1Q03111 559 aaPredicted RBP13.48□□□□□ -0.25
PTCH1-215ENST00000547672 PPARDQ03181 441 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 STX3Q13277 289 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 CTBP1Q13363 440 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 QPCTQ16769 361 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 ACCSLQ4AC99 568 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 N4BP2L1Q5TBK1 243 aaPredicted RBP13.48□□□□□ -0.25
PTCH1-215ENST00000547672 AGAP9Q5VTM2 703 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 FAM109BQ6ICB4 259 aaPredicted RBP13.48□□□□□ -0.25
PTCH1-215ENST00000547672 FAM45BPQ6NSW5 357 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 CES5AQ6NT32 575 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 TMC5Q6UXY8 1006 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 CCDC121Q6ZUS5 278 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 PTAR1Q7Z6K3 402 aaPredicted RBP13.48□□□□□ -0.25
PTCH1-215ENST00000547672 KDM1BQ8NB78 822 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 FAM45AQ8TCE6 357 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 PPP4R1Q8TF05 950 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 CCDC126Q96EE4 140 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 ELMO2Q96JJ3 720 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 EXOC2Q96KP1 924 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 TSSK1BQ9BXA7 367 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 TRIM55Q9BYV6 548 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 RABEP2Q9H5N1 569 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 NSUN3Q9H649 340 aaKnown RBP13.48□□□□□ -0.25
PTCH1-215ENST00000547672 NMRAL1Q9HBL8 299 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 THAP1Q9NVV9 213 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 LMCD1Q9NZU5 365 aa13.48□□□□□ -0.25
PTCH1-215ENST00000547672 SIRPGQ9P1W8 387 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms